Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01535 ATGACTCTGATGATACTTGCAGTGTGTGCTATTGTGTCACTGCTAGTTGGCATTGCAACTGAAGGATGGCCCAAGGGGGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTACTTGTTGTGTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAATTCAGGGATTTAGACAAGGAAAAGAGGAAAATTTCCGTTCAGGTCACAAGAAATGGATATAGACAGAAAATGTCAATATATGAATTACTTCCTGGTGACATTGTGCACCTTGCCATTGGTGACCAAGTCCCTGCTGATGGACTATTTGTCTCAGGATTTTCTGTGTTGATTGATGAATCAAGTTTAACAGGAGAGAGTGAGCCAGTGATTGTGAATTCTGAAAATCCATTTCTTCTTTCTGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGGTTACCAGTGTTGGCATGAGGACTCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGAGATGATGAGACCCCATTACAGGTGAAATTGAATGGTGTGGCAACCATTATTGGGAAGATAGGACTATTCTTTGCCGTGGTTACTTTTGCAGTTCTCGTGCATGGACTCATAAGCCAAAAACTCCAACAAGGAAGCTTAAGGACCTGGACAGGGGATGATGCGTTGGAGCTGTTAGAGTTCTTTGCAGTTGCAGTTACCATAGTTGTTGTTGCTGTTCCAGAAGGGCTACCATTAGCAGTTACACTGAGCCTTGCATTTGCTATGAAAAAAATGATGAATGACAAAGCCCTTGTGAGACATTTGGCAGCATGTGAGACAATGGGATCAGCCACAACTATATGTAGTGACAAGACTGGGACACTAACAACCAATCACATGACTGTTGTTAAAACATGCTTTTGCATGAACAGCAAGGAAGTGAACAACAAGGCTTCTAGTTTGTGCTCTGAACTCCCAGAATCTGCTGTGAAACTTCTGCTACAGTCAATATTCAACAATACAGGAGGAGAGGTCGTGATTAACCAAAATGGAAAACATGAGATTTTAGGAACTCCAACCGAGGCTGCAATATTGGAGTTTGGTTTGTCTTTAGGTGGAGATTTTCAAAAAGAGCGACAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAATTCTACTAAGAAGAAAATGAGTGTGGTGGTGGAGCTCCCTGGTGGAGGCTTAAGAGCCCACTGTAAAGGTGCATCGGAAATAGTTCTGGCTTCTTGTGACAAAGTGCTCAACTCAAATGGTGAGGTTGTGCCACTTGACGAAGAATCAACTAACCATCTTAAGGCTACAATAAACCAGTTTGCAAGTGAGGCACTTAGAACTCTATGCCTTGCCTATGTGGAATTGGAAAACGGGTTCTCTGCTGAAGGCTCTATTCCTGTTTCTGGATATACTTGTATAGGGGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCTGTGGCAGAATGTCGTTCAGCTGGAATAACAGTAAGAATGGTTACTGGGGACAACATCAATACTGCAAAGGCCATAGCCAGGGAGTGTGGGATTTTAACTGATGATGGCATAGCCATTGAAGGTCCAGAGTTTAGAGAGAAGAGTGAAAAAGAATTGCTTGAATTGATTCCAAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACACATGTTGGTGAAACACCTGCGTACCACGTTTGGGGAAGTGGTAGCTGTAACAGGTGATGGAACTAATGATGCCCCGGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGTATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACGATAGTAACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTGACAGTTAATGTGGTTGCATTAATAGTGAACTTCACATCGGCCTGCTTAACAGGTTAG 1995 0.4261 MTLMILAVCAIVSLLVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFRDLDKEKRKISVQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVIVNSENPFLLSGTKVQDGSCKMLVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVHGLISQKLQQGSLRTWTGDDALELLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCFCMNSKEVNNKASSLCSELPESAVKLLLQSIFNNTGGEVVINQNGKHEILGTPTEAAILEFGLSLGGDFQKERQACKLVKVEPFNSTKKKMSVVVELPGGGLRAHCKGASEIVLASCDKVLNSNGEVVPLDEESTNHLKATINQFASEALRTLCLAYVELENGFSAEGSIPVSGYTCIGVVGIKDPVRPGVKESVAECRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSEKELLELIPKIQVMARSSPLDKHMLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTG 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01535 664 Pfam Cation transport ATPase (P-type) 341 419 - -
Cca06g01535 664 Pfam E1-E2 ATPase 64 259 - -
Cca06g01535 664 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 287 490 IPR023299 GO:0000166
Cca06g01535 664 Gene3D - 4 662 - -
Cca06g01535 664 Gene3D - 52 164 - -
Cca06g01535 664 Gene3D - 278 626 IPR023214 -
Cca06g01535 664 PANTHER CALCIUM-TRANSPORTING ATPASE 1 1 664 - -
Cca06g01535 664 SFLD C1.7: P-type atpase like 263 633 - -
Cca06g01535 664 PRINTS P-type cation-transporting ATPase superfamily signature 581 600 - -
Cca06g01535 664 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Cca06g01535 664 PRINTS P-type cation-transporting ATPase superfamily signature 478 489 - -
Cca06g01535 664 PRINTS P-type cation-transporting ATPase superfamily signature 500 510 - -
Cca06g01535 664 PRINTS P-type cation-transporting ATPase superfamily signature 605 617 - -
Cca06g01535 664 PRINTS P-type cation-transporting ATPase superfamily signature 112 126 - -
Cca06g01535 664 Gene3D - 291 485 IPR023299 GO:0000166
Cca06g01535 664 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 2 663 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca06g01535 664 SUPERFAMILY HAD-like 279 655 IPR036412 -
Cca06g01535 664 ProSitePatterns E1-E2 ATPases phosphorylation site. 283 289 IPR018303 -
Cca06g01535 664 SFLD p-type atpase 263 633 IPR044492 -
Cca06g01535 664 PRINTS H+-transporting ATPase (proton pump) signature 437 455 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca06g01535 664 PRINTS H+-transporting ATPase (proton pump) signature 581 597 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca06g01535 664 PRINTS H+-transporting ATPase (proton pump) signature 613 638 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca06g01535 664 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 663 IPR023298 -
Cca06g01535 664 SUPERFAMILY Calcium ATPase, transduction domain A 66 161 IPR008250 -
Cca06g01535 664 PANTHER CATION TRANSPORTING ATPASE 1 664 - -
Cca06g01535 664 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 223 313 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca06g01535 664 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 33 203 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca06g01535 664 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 552 661 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01535 Cca-Chr6 30394977 30400456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01535 1 664 Primary Pumps ATPases AT4G37640 84.812 0.0 1151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01535 K01537 - gmx:547567 1226.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01535 06 30394977 30400456 Cca11g01419 11 36297069 36302268 PCT