Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01533 ATGGGGAGTTCTGGCACCTTATTTTCCTTGTCTAGCCTCATGTGTGAAGAAGGTGAAGCTAGCTTCTTTGAGGACCAAGATGAGATTGAAAACCCTGGCATTGAATATCTTGATAACCCTTGTTTCGTTTTGGAGGATGAAGAGGAATACATTGAGTATTTGTTCAGACAAGAAACGAGATTTGGATCCCAGAATCATCATTTTTTGGCCTCTGATGATCACTCAAACAGACACTGGTTGAGGAGTGCCCGTGTGGATGCCATTGACTGGATTTTCAATACACAAGCAAAATTTGGGTTCAAAGTTGAGACGGCCTATTTATCAGTGACTTACTTTGATCGGTTTCTTTCAAAGCGATCCATCGATGAATCAAGACCTTGGGCTATTCGGTTATTATCTGTGGCATGTTTATCTCTAGCAGCAAAGATGGAAGAACAAAATGTGCCACCTTTATCTGAGTATCCAATAGAAGAATATCGCTTTGAGAACAAAGTAATTAAGAACATGGAACTGATGATTTTGAGTACCTTGGAATGGAAAATGGGATCAGCAACTCCTTTTGCCTATTTGCATTACTTTGTCGGCAAGTTCTGCCCTGGATCCAAACCACAAACAATAATCACTAAAGCCATTGAACATATTGTGGCCATGGTCAAAGATGTTAATTTGATGGATCAACGACCATCTATAATAGCCTCGGCTTCCATATTGGCAGCTTTTGATGCTACATTAACAAGAAATGCAATGGATTTTCGAATAAGTGTGATCTCATCGTGGGGAAATATAGAAAGTGGACATGTGTTTTTCTGTTACAATCTAATACAGGAAAAGAAGAAAAGCAAAGTTAAGACCCCTTGTTCGAATTTATTATCTACCCCATCGGGCTCCACGTGTGTTCTTGAGAATCAATCTGACACTTCTACGGGGGGTGGAGGGAGGGATATGGAAGATAAGATTAATGGGAATTTGGTGTCAGAATCTGAATCACTTGTGCGTTGTGGGTTGCATTGCACACTTATCCAGTCTGGCATGGACCTTGTATTTTGCCGTGAACAAATTACCGTGACTCAGTACCTTATTGTTCCTTGGTTCACATGGAGACTGAAGAAGTGA 1113 0.4061 MGSSGTLFSLSSLMCEEGEASFFEDQDEIENPGIEYLDNPCFVLEDEEEYIEYLFRQETRFGSQNHHFLASDDHSNRHWLRSARVDAIDWIFNTQAKFGFKVETAYLSVTYFDRFLSKRSIDESRPWAIRLLSVACLSLAAKMEEQNVPPLSEYPIEEYRFENKVIKNMELMILSTLEWKMGSATPFAYLHYFVGKFCPGSKPQTIITKAIEHIVAMVKDVNLMDQRPSIIASASILAAFDATLTRNAMDFRISVISSWGNIESGHVFFCYNLIQEKKKSKVKTPCSNLLSTPSGSTCVLENQSDTSTGGGGRDMEDKINGNLVSESESLVRCGLHCTLIQSGMDLVFCREQITVTQYLIVPWFTWRLKK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01533 370 ProSitePatterns Cyclins signature. 84 115 IPR006671 -
Cca06g01533 370 SMART cyclin_7 89 175 IPR013763 -
Cca06g01533 370 Gene3D - 183 243 - -
Cca06g01533 370 PANTHER CYCLIN-D5-1 50 313 - -
Cca06g01533 370 PANTHER CYCLINS 50 313 IPR039361 -
Cca06g01533 370 SUPERFAMILY Cyclin-like 38 181 IPR036915 -
Cca06g01533 370 Pfam Cyclin, N-terminal domain 50 181 IPR006671 -
Cca06g01533 370 Gene3D - 76 182 - -
Cca06g01533 370 CDD CYCLIN 84 174 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01533 Cca-Chr6 30381161 30384695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01533 9 264 Core Cell Cycle Gene Families AT4G37630 36.531 4.72e-46 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01533 K18811 - gmx:100798140 541.576