Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01532 ATGGCTAACATGGACAGTAGTTGTTGTAAATCTCTCGAGAATACTAAGAAATTCACTCCGGTACCGCCACTTCTGCCCCATTCAGCATCAACCAGTTGTTCTTGTGAATATGTGGCGCCGAATAATTCAATACCAAGATGGCGCAGCAACAATGTCTCATCAACCGGAACAGATTTGTGGGAGCGTCTTTTTGATCAAGGGTATAAAGCAGATGTTTGCATTAATACTGATAACGGTGGCGTTGTTTATGCTCATTCTAACATTCTTGGCATGACTTCTCCCGTATTGAAAGGCATGCTGAAGCAAACAAAACGTCATGGTCGATGGCGAACAATCTCAATCATTGGGGTTCCACATGATGCTGTTCGAGTTTTTATTCGATTCTTGTACACTTCCAGTTATGAGAAAGAAGAAATGGATGAATTCGTGCTACATTTGCTGGTGTTGTCACATGTATACGTGGTCCCTCACTTGAAAAGTGAATGTGAACAGAAGCTAGAATTGGGTTTACTCACCATAGATAATTTGGTTGATGTATTTCAACTTGCCTTACTGTGTGATGCTCCAAGGCTCAGCCTCATTTGTCACCGCATGGTGCTAAAAAACTTCAAAGCTGTTTCGGCATCAGAAGGATGGAAGTCAATGAAGCTGAGCCACCCGGTTCTAGAAAAGGAAATTCTGGAGTCAGTGATTGATGAGGAACATATTAAAAAAGAGAGGATTAGAAAAATGAAGGAAAGAGAGATCTATCTACAATTGTACGAGGCCATGGAAGCTCTTGTTCACATTTGTAGAGATGGTTGTCGAACTATTGGTCCTCATGATAAAGACTTCAAAGCAAACCAACCGTGTAAGTATGCTGCATGCAAGGGGCTAGAATTGCTTGTTCGTCATTTTGCTGGGTGCAAGTTGAGGGTCCCTGGAGGTTGTGTTCATTGCAAGAGAATGTGGCAATTATTGGAGCTGCACTCTCGACTATGTGCTGATCCAGATTACTGTAGAGTTCCTTTGTGCAGGAACTTTAAGCAGCGAATATCAACACAAAGCAAGAAAGACGAAATTAGATGGAAAATATTGGTTGAGAAGATCTTGAGAACAAGAGGAATTGGGATAGCATCCTGCTTTCTGCCGCAATAA 1137 0.4186 MANMDSSCCKSLENTKKFTPVPPLLPHSASTSCSCEYVAPNNSIPRWRSNNVSSTGTDLWERLFDQGYKADVCINTDNGGVVYAHSNILGMTSPVLKGMLKQTKRHGRWRTISIIGVPHDAVRVFIRFLYTSSYEKEEMDEFVLHLLVLSHVYVVPHLKSECEQKLELGLLTIDNLVDVFQLALLCDAPRLSLICHRMVLKNFKAVSASEGWKSMKLSHPVLEKEILESVIDEEHIKKERIRKMKEREIYLQLYEAMEALVHICRDGCRTIGPHDKDFKANQPCKYAACKGLELLVRHFAGCKLRVPGGCVHCKRMWQLLELHSRLCADPDYCRVPLCRNFKQRISTQSKKDEIRWKILVEKILRTRGIGIASCFLPQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01532 378 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 4 376 - -
Cca06g01532 378 SMART TAZ_2 247 339 IPR000197 -
Cca06g01532 378 Gene3D TAZ domain 245 366 IPR035898 -
Cca06g01532 378 CDD BACK 172 229 - -
Cca06g01532 378 SMART BTB_4 70 170 IPR000210 GO:0005515
Cca06g01532 378 Gene3D Potassium Channel Kv1.1; Chain A 41 170 IPR011333 -
Cca06g01532 378 Gene3D - 171 244 - -
Cca06g01532 378 SUPERFAMILY TAZ domain 247 346 IPR035898 -
Cca06g01532 378 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 4 376 IPR044513 -
Cca06g01532 378 Pfam BTB/POZ domain 62 166 IPR000210 GO:0005515
Cca06g01532 378 ProSiteProfiles BTB domain profile. 70 138 IPR000210 GO:0005515
Cca06g01532 378 Pfam TAZ zinc finger 254 338 IPR000197 -
Cca06g01532 378 SUPERFAMILY POZ domain 47 166 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01532 Cca-Chr6 30368321 30374463 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Cca06g01532 BTB 1.3e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01532 - - gmx:100807461 621.698