Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01531 ATGAAAGCTCCTAACTTGAGCTTCTACATCTACATCGTCATCGTTACACTCTCCCTATCCATCCCAGTCAACGCTGCAAAACAAGTCAATGAATCCGGCGCAAGAAGAATCCTGCACCAGCCATTATTCCCGGCGAGTTCAGCGCCACCGCCAGCAGCCCTGTCTCCGCCTCCTCCGCCGGCGGAGACCCCTCCTACCCCCGACAACATCCCCTTCTTCCACGAGTACCCGGGGGGGCCACCGCCGGATCAGAACCAGAACCAGAACCAGGCATCGGCGTCGAGTTCAAACAGCACAATCGCCAACCCAACGGCCACGCAGCCGTCGAAAGGAACAAAAAACGTAGCAATCGCGATCTCCGTGGGAATCGTGACGCTGGGAATGCTCTCAGCGCTGGCGTTTTTCTTATACAAACACAGAGCCAAACACCCCGCGGAGACGCAGAAGCTGGTTGGAGCGACTGGGAATAGCAATAACAATAACAATAACCCAAACAGGAATAGCGAGGACGCAAACGCAAACGCAAACGCAGCGGCACCACCGTCGAGTTTTCTCTACATTGGGACGGTGGAACCCACGCGCGCCTCGACCGCGTTCAGCGACTCGCGAGAAAATAATAAAGCCAACCGATCGCCGTACCGGAAGCTGAAGCCATCCGATCGCTATAGGCCGAGTCCCGAGTTGCAGCCAATGCCGCCGTTGAGTAAGCCTCCCGACGGGAACTACCCGCCGGCGGTCTCCTCCGAAGAGTCCTCCGACGACGAGGAGACGACGGCGTTTCACTCGCCGCAGAACTCGTCGGTCGATGGTTACTTCACGCCTGCCTCGCGTCAGAGCTCTCTCGTCAACGGAAGTCCCACACCGGTCGTTCCGTTCTCCAAGAGAACTTCGCCAAAGTCACGTTTTTCGGCTCCGTCGCCGGAGATTAGACACGTCATGATTCCGTCGATAAAGcagcctcagcctcagcctcagcctcggcctACGCCACCGTCTCCGCCACCTCAGCATTTCCGAAAGCCGAAATTCTCGGCGCCTCCCGCACCTCCGAATTTGAAGCAACTTCAGTCAACAACCGACACTGCTCCGCAAGTGTCTAGGCCTTCACTTATCcctactcctcctccgcctcctccgccGCTGCGGAAACCTGGGTCACCGGCGGTTAGTGGTTCCTCTAATTCTGCATCCGTAAAGAGGCAGTCTTTGTCGCCGGTTCAGAGCAATGGGTCGAAAAGTTCAGAGGTTGCTCAAAGTGTGAGCTTTTCCGAGAGGCTTGAAGCCAATGAAGCGGAAGGAGCAAAACCCAAGTTAAAGGCTCTGCATTGGGATAAAGTGCGTGCGACCTCAGACCGTGCTACTGTGTGGGACCAGATAAAATCAAGCTCCTTTCAGTTGAATGAGGACATGATGGAATCGTTGTTTGGCTGCAAAGCCGTGAATTCTGCCCCGAAGAAAGAAACTGCTAGAAAATCAGTTCTTCCGTCCGTTGATCAGGAGAATAGGGTGTTAGACCCGAAGAAGTCACAGAACATAGCTATACTGCTCAGGGCTTTGAATGTGACTAGAGATGAGGTGTCGGAAGCGCTTTTAGATGGGAATCCTGAAGGTTTGGGCACTGAGTTATTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGAAGAGATAAAACTTAAAAACTATGATGGTGACCTCTCAAAACTTGGATCTGCGGAAAGATTTCTTAAAGCGGTGCTTGATATTCCTTTTGCCTTTAAAAGAGTTGAAGCTATGCTATACCGAGCCAACTTTGATTCAGAAATTAACTACCTTAGGAAGTCTTTTCAAACCATGGAGGCTGCAAGTGAGGAATTAAGGAACAGCCGATTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGAATGAATGTCGGCACTAATCGAGGGGACGCCAAAGCTTTCAAACTGGATACACTCCTAAAACTTGTGGATATAAAGGGAACAGACGGAAAGACCACATTGCTCCACTTTGTGGTCCAAGAGATCATTAGATCTGAGGGTGCAGGAGCAGAGTCTGCAAATGACAATGTGAAAATGGATTCCAAATTTAATGAGGATGAGTTTAAGAAGCAAGGGTTGCAGGTTGTGGCAGGACTCAGTAAAGATCTTAGTAATGTAAAAAAAGCAGCAGGGATGGATTCAGATGTCTTGAGCAGCTATCTTTCAAAGCTTGAAACAGGGCTTGATAAGGTGCGATTGGTTTTGCAATATGAGAAGCCAGATATGCAAGGCAATTTCTTTAACTCCACAAAGTTATTTCTGAAATATGCTGAAGATGAAATTGTAAGGATCAAAGAGGATGAGAGAAAAGCCTTGTTTCTTGTGAAAGAAGTTACAGAATACTTTCATGGGAATGTAGCAAAGGAAGAAGCCCACCCTCTAAGAATTTTCATGATTGTAAGAGACTTTTTGAATATTCTTGATCTAGTGTGCAAAGAAGTGGAAAAGATGCATGATAGAATTGTTGGTGGTTCAGGTAGATCCTTCCGACTAGCTCAAAATGCAACTTTACCTGTTCTCAACAGGTACAATCCAAAGCAGGATAGAAGCTCAGATGAGGAAAGTTCATCCCCCTAG 2628 0.4779 MKAPNLSFYIYIVIVTLSLSIPVNAAKQVNESGARRILHQPLFPASSAPPPAALSPPPPPAETPPTPDNIPFFHEYPGGPPPDQNQNQNQASASSSNSTIANPTATQPSKGTKNVAIAISVGIVTLGMLSALAFFLYKHRAKHPAETQKLVGATGNSNNNNNNPNRNSEDANANANAAAPPSSFLYIGTVEPTRASTAFSDSRENNKANRSPYRKLKPSDRYRPSPELQPMPPLSKPPDGNYPPAVSSEESSDDEETTAFHSPQNSSVDGYFTPASRQSSLVNGSPTPVVPFSKRTSPKSRFSAPSPEIRHVMIPSIKQPQPQPQPRPTPPSPPPQHFRKPKFSAPPAPPNLKQLQSTTDTAPQVSRPSLIPTPPPPPPPLRKPGSPAVSGSSNSASVKRQSLSPVQSNGSKSSEVAQSVSFSERLEANEAEGAKPKLKALHWDKVRATSDRATVWDQIKSSSFQLNEDMMESLFGCKAVNSAPKKETARKSVLPSVDQENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPEGLGTELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDSEINYLRKSFQTMEAASEELRNSRLFLKLLEAVLRTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGAESANDNVKMDSKFNEDEFKKQGLQVVAGLSKDLSNVKKAAGMDSDVLSSYLSKLETGLDKVRLVLQYEKPDMQGNFFNSTKLFLKYAEDEIVRIKEDERKALFLVKEVTEYFHGNVAKEEAHPLRIFMIVRDFLNILDLVCKEVEKMHDRIVGGSGRSFRLAQNATLPVLNRYNPKQDRSSDEESSSP 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01531 875 MobiDBLite consensus disorder prediction 207 222 - -
Cca06g01531 875 MobiDBLite consensus disorder prediction 150 177 - -
Cca06g01531 875 MobiDBLite consensus disorder prediction 45 111 - -
Cca06g01531 875 MobiDBLite consensus disorder prediction 387 416 - -
Cca06g01531 875 ProSiteProfiles Formin homology-2 (FH2) domain profile. 428 850 IPR015425 -
Cca06g01531 875 SUPERFAMILY Formin homology 2 domain (FH2 domain) 441 835 - -
Cca06g01531 875 MobiDBLite consensus disorder prediction 368 385 - -
Cca06g01531 875 PRINTS Proline rich extensin signature 218 230 - -
Cca06g01531 875 PRINTS Proline rich extensin signature 232 248 - -
Cca06g01531 875 PRINTS Proline rich extensin signature 286 307 - -
Cca06g01531 875 PRINTS Proline rich extensin signature 320 336 - -
Cca06g01531 875 PRINTS Proline rich extensin signature 337 354 - -
Cca06g01531 875 PRINTS Proline rich extensin signature 359 384 - -
Cca06g01531 875 PANTHER FORMIN-RELATED 7 875 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca06g01531 875 Gene3D Formin, FH2 domain 423 836 IPR042201 -
Cca06g01531 875 MobiDBLite consensus disorder prediction 319 348 - -
Cca06g01531 875 Pfam Formin Homology 2 Domain 433 824 IPR015425 -
Cca06g01531 875 MobiDBLite consensus disorder prediction 225 240 - -
Cca06g01531 875 MobiDBLite consensus disorder prediction 258 303 - -
Cca06g01531 875 SMART it6_source 428 839 IPR015425 -
Cca06g01531 875 MobiDBLite consensus disorder prediction 81 111 - -
Cca06g01531 875 MobiDBLite consensus disorder prediction 350 367 - -
Cca06g01531 875 MobiDBLite consensus disorder prediction 149 177 - -
Cca06g01531 875 MobiDBLite consensus disorder prediction 45 78 - -
Cca06g01531 875 MobiDBLite consensus disorder prediction 196 416 - -
Cca06g01531 875 PANTHER FORMIN-LIKE PROTEIN 7 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01531 Cca-Chr6 30359229 30364166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01531 29 865 FH2 protein (formin) Gene Family AT5G67470 57.416 0.0 832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01531 06 30359229 30364166 Cca11g01418 11 36291969 36296108 PCT