Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01525 ATGAGTTGCAACGGTTGCAGGGTCCTACGCAAGGGTTGCAGCGAGTCTTGCATCCTGCGACCTTGTCTTCAGTGGATCGACACGCCCGAGGCCCAAGGCCATGCCACTGTCTTCGTAGCCAAATTCTTCGGCCGTGCCGACCTTATGTCCTTCATTTCCAACGTCCCACAATCTCAAAGACCTTCTCTGTTTCAATCTCTGTTGTTCGAAGCGTGTGGGCGAACGGTGAACCCTGTTAACGGCGCCGTGGGCCTTCTCTGGACCGGAAACTGGCACGTCTGCCAGGCCGCCGTTGAGACGGTACTCCGCGGCGGCACGCTCCGCCCCATGCCGGAGCTTCTCGGCCTAGACGCTCCCACCGCCGACGAGGCCTCCGAAGGGGAAGTTACCTGTACCGACAAGTGGAGGGTCCGAGATCCGAACCCGAATTTCCGGCTCCCGGGTTCCAGGTCCGGTAACGCTGCTTCCGGCGCTAAACGCAAGCGTTTTGAAGAGCTCGCGAAGCTTCAGACAACCACCGATCTTAACCTGCGACTCACTCCGAGTTTCCTGCAGAACGCGTGCCGGGAAATTCGCCGGCCGGGATCGCCGTCGATGAACTCCGAGGAGTCCGTGACGACGACGGCGTGTTTGGAGAGCGGGATCGGAGATCACTACGCCGCCGACGGTGACCGGAAAGCGCTGAACCTTTTCATCTGA 699 0.6009 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPQSQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELLGLDAPTADEASEGEVTCTDKWRVRDPNPNFRLPGSRSGNAASGAKRKRFEELAKLQTTTDLNLRLTPSFLQNACREIRRPGSPSMNSEESVTTTACLESGIGDHYAADGDRKALNLFI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01525 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 232 - -
Cca06g01525 232 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cca06g01525 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 232 - -
Cca06g01525 232 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01525 Cca-Chr6 30230414 30232241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01525 1 231 AS2 family AT3G49940 56.917 3.11e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca06g01525 LOB 3.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01525 - - gmx:100802764 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01409 11 36076420 36077853 Cca06g01525 06 30230414 30232241 PCT