Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01515 ATGGTTCATCTCGCCGGTGCCGGAATTAGAACAGTCGTCGGAATCAATCGGAGGCCAACATTTTTTACACCAACTCTAACAAACAGTACCATTTCAACGCTTTACGTCGTCGCATCTCTGTGTCGGAGCTGCAGAGAACATGCTTTCAGTAGCGCTTGGACAGATTTTCCCGTAGAGAACGCCTACGAGCTTTTAGGAGTGTCCGAGAATAGCTCCTTTGCTGAGATTAAAGCGTCGTTTCGCAAATTGGCCAAAGAAACTCACCCGGACCTCGCCGAGTCAAGGAACGATTCCACTGCGTCTCGACGATTCGTACAAATCCTGGCCGCCTACGAGATTCTTTCAGATTCTCAAAAGAGAGCCCATTATGACATGTACTTGTTGTCTCAGAAAAAGCTTATGCAAAAGCATTCTGGAAAGGGTTCAAAATTGCATATTTACGAATCACAGTTTACTACATTCAAGGAGATGGAAGTTGTTGAATGGTTAAAATGGTACAGATTAACTATGCATAATATTTTGTCAGAGAAGAAGGTGGTGGTTGGAACAGGCTATTTTGATGTACTTGAGAGAGATTTTTATTCAGCTATTCATGCAGCATACTATGGTCCTGAAATTGATTTTATGGCCATGGAGCTTCTTCCTGACTGCTTTGAGGCTGAGGAGAGGTCCTCTTATGAAACTCCTGAGGTTTTGCACTTAGTTTCAGGACGTGATCTTTTCGGGATGGTTTGCCTAGTCAACAAAATTCCAGAGATATCAACTATTAACAATGAGAAGTTAACTTCTTCTGGATCCTTCCATTCAGACCCATGTCAATCTATAATAAATCTGAACATCGACAGGAATGCAGAAAGGCCAGATGATTTTGAAACTCATCAAGGTCACAGCTCTAAAACTTCAAGTATTGTATCAGATGCATATAGACATCTAGAATTGCATATCTCTGGAAGAGTGGTTGCTACAGCATCTAGGGCCCTACCTAGATGTTGTTCTGAAGCGATGCAGACAGAAGATGCTGAAGATCACATTCACGTGTTCCTGAACTTCTGTGGAGATCCCAATCATATTAGCAGTGATTTTTCGAAAGATAATCCTGCAAATGGTGCAGTTGGAAGAAGAATTCATTTGGGAACTATATCTGGACTTGGGAGCAGTCCAGACGAAGGTTGTTGTTATGCCTACGATGACAAGGGTACAAAGACCCATGTGATTATGAAGCATAGAACATTGATGGTGAAGCATATGCACTGGTATCAAGTGAGTGAGAAAGTTTCAGTTTGTGAGTGTAGATGCACTAGAGCACGTTTACCCCCAAGCAAATTTTGGCTATTTGAGCCTCGTTGTGGCTTCCATGACATAGGGGGTTGGTATGTTGAAACATATGGCAAAGATAAGAATGGTCGTACAATGCCATCACAAAGGTTCTGGGATGGCTTGGACTATAACAAGCAAGCTGACAGAAGACTTCACCCAGCAATGTATCTGTTTGCTCTTGCATATCGAACACTTGACCTTGAGTATGCCAAGGCAAGCAGGAAATCATTTAGTAATGTTGTTGGAGCACAAATGTTTCGAATTCTTCATTGTAATACCAGAAGATTTCCCAGTGGGTTTACAGTTACAAAAAGACTCTTGAGATGCTCTGAACCAATATCATGCCTGAGCCAATTTGCACCAACACTGAATTTGAGAAAAATATTCTCTGGGCGCTACTTGTTTCAGAATTGTTGTGCAACCCAAATCATCATGGATATACTTCTATGGATTTCTATGTGTCATGGAGCTGGACAGTTTCCTGGAATTTACTCGGTCATCATAACTCATGGTATATCAAATACAACTTCTGCTTGCATAGACTTGTCCCTATTGGCATGTGTCTACTTTTGTATattataa 1899 0.415 MVHLAGAGIRTVVGINRRPTFFTPTLTNSTISTLYVVASLCRSCREHAFSSAWTDFPVENAYELLGVSENSSFAEIKASFRKLAKETHPDLAESRNDSTASRRFVQILAAYEILSDSQKRAHYDMYLLSQKKLMQKHSGKGSKLHIYESQFTTFKEMEVVEWLKWYRLTMHNILSEKKVVVGTGYFDVLERDFYSAIHAAYYGPEIDFMAMELLPDCFEAEERSSYETPEVLHLVSGRDLFGMVCLVNKIPEISTINNEKLTSSGSFHSDPCQSIINLNIDRNAERPDDFETHQGHSSKTSSIVSDAYRHLELHISGRVVATASRALPRCCSEAMQTEDAEDHIHVFLNFCGDPNHISSDFSKDNPANGAVGRRIHLGTISGLGSSPDEGCCYAYDDKGTKTHVIMKHRTLMVKHMHWYQVSEKVSVCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKDKNGRTMPSQRFWDGLDYNKQADRRLHPAMYLFALAYRTLDLEYAKASRKSFSNVVGAQMFRILHCNTRRFPSGFTVTKRLLRCSEPISCLSQFAPTLNLRKIFSGRYLFQNCCATQIIMDILLWISMCHGAGQFPGIYSVIITHGISNTTSACIDLSLLACVYFCIL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01515 632 Pfam DnaJ domain 60 124 IPR001623 -
Cca06g01515 632 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 35 534 - -
Cca06g01515 632 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Cca06g01515 632 SUPERFAMILY Chaperone J-domain 58 135 IPR036869 -
Cca06g01515 632 PRINTS DnaJ domain signature 80 95 IPR001623 -
Cca06g01515 632 PRINTS DnaJ domain signature 62 80 IPR001623 -
Cca06g01515 632 PRINTS DnaJ domain signature 99 119 IPR001623 -
Cca06g01515 632 ProSiteProfiles dnaJ domain profile. 60 127 IPR001623 -
Cca06g01515 632 CDD DnaJ 60 116 IPR001623 -
Cca06g01515 632 Gene3D DnaJ domain 53 145 IPR036869 -
Cca06g01515 632 SMART dnaj_3 59 119 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01515 Cca-Chr6 30129169 30134064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01515 62 126 C2H2 Transcription Factor Family AT1G74250 42.647 8.46e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01515 - - gmx:100805332 946.036