Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01511 ATGTTGGAGCTGTGGCGCAGGCCACTGGAGATGTGCTTCGGTGGTGGAAGCAACGATGATAGCCTCCTCTGGCACACGGACCTCAAACCTCACGCTTCGGGAAACTATTCAATCGCAGTGGTTCAAGCTAATTCCTCCTTAGAAGACCAAGCACAGGTATTCACCTCTCCCTCCCAAACCTTCGTTGGCGTATACGACGGACACGGTGGACCCGAAGCTTCCCGTTTCATCACCAACCACCTCTTCACCTTCCTTCGCAGGTTTGGAGCAGAGGAAGGTGGGTTGTCCGAGGAGGTGATAAAGAAGGCGTTCGAGGCGACCGAGGAGGAGTTTTTGCGTGTAGTGAGGGAATCGTGGATTGCGCGGCCGCAGATAGCTTCGGTGGGTTCGTGTTGTCTTCTGGGAGCGATTTCGAACGGCGTTCTTTATGTGGCGAATCTGGGGGATTCGAGAGCGGTTTTGGGACGGAAAGCGTTGGTGAGAGAGGGGAATTGTGGTCCTGTTGTGGCAGAGCGTTTGTCCACTGATCATAATGTTGGAGTGGAGGAGGTTAGAAAGGAGGTTCAGGCTCTTCACCCTGATGATGCACACATTGTGGTTTGTTGTCGTGGAGTTTGGCGAATCAAGGGCATTATTCAGGTTTCAAGATCAATTGGAGATGTATACCTAAAGAAACCAGACTTTGACGCTAATCCTCTGTTCCAACAATTTGTATGTCCACTATACTTGAAGAGACCTGTGATGACAGCTGAACCATCGATATTGACACGGAAATTAAAGGTAGATGATCTGTTTTTGATCTTTGCATCAGACGGACTTTGGGAGCATTTAACTGATGAAGCGGCTGTCGAAATCATCTACAGAAGCCCCAGAATAGGAATAGCAAAACGATTGGTGAGAGCTGCAATAGAAGAGGTTGCAAAGAAAAGAGAAACGAGATATGAGGATTTAAGGAAAATTGAGAAGGGTCTAAGGCGTCATTTTCATGATGATATTACAGTGATCGTTCTGTATCTCGATCATTCAGATTCACAAGATTCTCTAGAGGGTAGGTCAAGACATCAAGGAGTTTATGATTGCGTTAATACCCCTATTGATATATTCTCTCTGAGAGCAGGTGAAGCTGATCTTTAA 1134 0.4718 MLELWRRPLEMCFGGGSNDDSLLWHTDLKPHASGNYSIAVVQANSSLEDQAQVFTSPSQTFVGVYDGHGGPEASRFITNHLFTFLRRFGAEEGGLSEEVIKKAFEATEEEFLRVVRESWIARPQIASVGSCCLLGAISNGVLYVANLGDSRAVLGRKALVREGNCGPVVAERLSTDHNVGVEEVRKEVQALHPDDAHIVVCCRGVWRIKGIIQVSRSIGDVYLKKPDFDANPLFQQFVCPLYLKRPVMTAEPSILTRKLKVDDLFLIFASDGLWEHLTDEAAVEIIYRSPRIGIAKRLVRAAIEEVAKKRETRYEDLRKIEKGLRRHFHDDITVIVLYLDHSDSQDSLEGRSRHQGVYDCVNTPIDIFSLRAGEADL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01511 377 ProSiteProfiles PPM-type phosphatase domain profile. 35 339 IPR001932 -
Cca06g01511 377 SMART PP2C_4 28 337 IPR001932 -
Cca06g01511 377 PANTHER ALPHABET, ISOFORM E-RELATED 5 376 - -
Cca06g01511 377 SUPERFAMILY PP2C-like 40 340 IPR036457 -
Cca06g01511 377 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 5 376 - -
Cca06g01511 377 CDD PP2Cc 42 339 IPR001932 -
Cca06g01511 377 Gene3D - 25 348 IPR036457 -
Cca06g01511 377 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Cca06g01511 377 Pfam Protein phosphatase 2C 57 305 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01511 Cca-Chr6 30084687 30089019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01511 18 340 PP2C-type Phosphatase Gene Family AT3G51370 54.985 4.33e-136 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01511 - K01102 gmx:100802394 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01511 06 30084687 30089019 Cca02g02511 02 46301104 46304453 PCT