Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01504 ATGCCTCCTCAAGACACCCAACAACCTCTGCTAGAGCAAGAGGAGACCGCCTACGATTCCTCGGAGAAGGTCGTGGTGGTCGGAATCGACGAGCACGGCGGGGACGTGGAGGCCCCGCCGTTCTCATGGAGGAAGCTTTGGCTCTTCACTGGGCCCGGCTTTCTCATGAGCATCGCCTTCCTGGATCCCGGGAACCTCGAGGGGGATCTTCAGTCGGGTGCCATTGCTGGGTACTCGCTCTTGTGGCTCCTCATGTGGGCCACGGCTATGGGCCTTATTATCCAGCTTCTCTCGGCCCGTCTCGGCGTCGCCACTGGGAGACACTTAGCCGAACTCTGCAGAGAAGAGTACCCTGCGTGGGCTAGGATTGTGCTGTGGTTGATGACCGAGGTTGCTCTTATTGGCTCCGACATACAAGAGGTTATTGGCAGCGCTATTGCTATTAGGATTCTCAGTAACGGCGTCGTTCCGCTCTGGGCTGGGGTTGTTGTTACCGCTTTCGATTGTTTCATTTTTCTCTTTCTTGAGAACTATGGCGTCAGGAAATTGGAGGCGTTTTTCGCTGTTCTCATTGGTGTAATGGCTCTCTCATTTGCTTGGATGTTTGGTGAAGCAAAGCCTGATGGTGTTGATGTTCTCGTAGGTATTTTGGTCCCTAAACTTAGCTCCAGAACTATACAGCAAGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTGTTTTTGCATTCTGCGCTTGTTCAGTCAAGGCAGGTTGACCCCAGCAAGAAAGGGCGTGTTCAAGAAGCTATTAATTACTACTCTATAGAGTCCACCATCGCCCTTGCAGTGTCCTTTATCATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACCGAAATAGCAAATAGCATTGGTCTTGTAAATGCAGGGCAGTACCTTCAGGAGAAGTACGGGGGTGGACTATTCCCAATCCTGTATATATGGGGTATCGGGTTATTAGCAGCGGGCCAGAGTAGCACAATCACGGGTACATATGCTGGACAATTTATCATGGGGGGTTTTTTGAATTTAAGGTTGAAAAAATGGATCAGGGCATTAATTACACGAAGTTTTGCAATCATCCCAACCATGATAGTTGCTCTTATATTCGATACCTCGGAGGAATCATTAGATGTTCTGAATGAATGGCTTAATGTTCTCCAGTCAGTTCAAATCCCCTTTGCACTCATCCCCTTGCTTTGCTTGGTGTCCAAAGAACAGATAATGGGTAGTTTCAAAATCGGCTCAGTCCTCAAGATTATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAACGGCTATCTTCTGCTGGAATTCTTCTCCTCTGAAGTGAACGGAGCAGTGTTTGCCACTGTAGTGTGTGTATTAACAGCTGCCTATGTGGCATTCATACTTTACCTTATTTCACGGGCCATTACCTTTACACCGTGGCAAAGTTTAACCCGATCAAAGACGGTTGCTGGCGCAGAGAATTGA 1518 0.4802 MPPQDTQQPLLEQEETAYDSSEKVVVVGIDEHGGDVEAPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLIIQLLSARLGVATGRHLAELCREEYPAWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGVVPLWAGVVVTAFDCFIFLFLENYGVRKLEAFFAVLIGVMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPSKKGRVQEAINYYSIESTIALAVSFIINIFVTTVFAKGFYGTEIANSIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSFAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFKIGSVLKIISWLVAALVIVINGYLLLEFFSSEVNGAVFATVVCVLTAAYVAFILYLISRAITFTPWQSLTRSKTVAGAEN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01504 505 Hamap Divalent metal cation transporter MntH [mntH]. 32 454 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 12 504 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 44 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 Pfam Natural resistance-associated macrophage protein 67 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 PRINTS Natural resistance-associated macrophage protein signature 125 151 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 PRINTS Natural resistance-associated macrophage protein signature 155 174 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 PRINTS Natural resistance-associated macrophage protein signature 180 201 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 PRINTS Natural resistance-associated macrophage protein signature 336 355 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 PRINTS Natural resistance-associated macrophage protein signature 364 381 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 PRINTS Natural resistance-associated macrophage protein signature 398 417 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca06g01504 505 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 12 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01504 Cca-Chr6 30001108 30004880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01504 31 491 Inorganic Solute Cotransporters AT2G23150 82.468 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01504 K21398 - gmx:100807811 950.273