Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01497 ATGAACCCTGGCGTCGTGGTCACCAGAAAAGACATGGACCGGATCAAAGGCCCATGGAGCCCGGAGGAGGACGAGGCTCTCCAGAGGCTCGTGGAGAAGCACGGGCCCAGGAACTGGTCCCTCATCAGCAGGTCCATCCCGGGCCGCTCAGGGAAGTCCTGCAGGCTCCGCTGGTGCAACCAGCTCTCGCCCCAGGTCGAGCACCGGGCCTTCACGCCCGAAGAGGACGACACCATAATCCGGGCCCACGCCCGCTTCGGCAACAAGTGGGCCACCATAGCCCGCCTCCTCCACGGCAGAACCGACAACGCGATTAAAAACCACTGGAACTCCACCTTGAAGCGCAAGTGCTCTTCCGCCATGATCGATGACATCCAACCGCTCAAACGCTCCGTCAGCGCCGGCGCCGCCATACCCGTCTCCACCGGACTCTACATCAACCCTCCCACTCCCGGCAGCCCCTCCGGATCCGATGTCAGCGAGTCCAGTGTACCCGTTGCGTCCCCATCCCACGTTTACCGGCCCGTCGCTAGGCCCGGCCCGGTTCTACCGCCCGTAGAAACCACCTCGTCCTCCAATGACCCCCCACCTTCTCTTCCCCTATCACTCCCCGGCGCCGACTCTTCTGAAGTCTCTAATCATgccgcgccgccacctccgccgccgTCAAATACTATCCCTCTGCTGCCAATGATGGCGGCTCCGGTGCCTCCGCCGCCGGTGATGGGGCCGTTTAATTTAAGTGCGGAATTTTTGGCTGTGATGCAGGAAATGATAAGGAAAGAGGTGAGGAGTTATATGGAGATGCAGAATGGGATGTGTTTTCATGCAGCTGATGATGGGTTTAGGAATGCTTCCGTGAAGCGAATTGGGATTAGCAGGATCGATTCGTAA 894 0.5772 MNPGVVVTRKDMDRIKGPWSPEEDEALQRLVEKHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCSSAMIDDIQPLKRSVSAGAAIPVSTGLYINPPTPGSPSGSDVSESSVPVASPSHVYRPVARPGPVLPPVETTSSSNDPPPSLPLSLPGADSSEVSNHAAPPPPPPSNTIPLLPMMAAPVPPPPVMGPFNLSAEFLAVMQEMIRKEVRSYMEMQNGMCFHAADDGFRNASVKRIGISRIDS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01497 297 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Cca06g01497 297 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca06g01497 297 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Cca06g01497 297 Pfam Myb-like DNA-binding domain 16 62 IPR001005 -
Cca06g01497 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 66 IPR017930 -
Cca06g01497 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 117 IPR017930 -
Cca06g01497 297 SMART sant 67 115 IPR001005 -
Cca06g01497 297 SMART sant 15 64 IPR001005 -
Cca06g01497 297 CDD SANT 18 60 IPR001005 -
Cca06g01497 297 PANTHER MYB PROTEIN-RELATED 6 269 - -
Cca06g01497 297 MobiDBLite consensus disorder prediction 146 167 - -
Cca06g01497 297 PANTHER MYB TRANSCRIPTION FACTOR 6 269 - -
Cca06g01497 297 CDD SANT 70 113 IPR001005 -
Cca06g01497 297 Gene3D - 69 131 - -
Cca06g01497 297 Gene3D - 15 67 - -
Cca06g01497 297 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Cca06g01497 297 MobiDBLite consensus disorder prediction 144 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01497 Cca-Chr6 29931816 29933800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01497 8 296 MYB Transcription Factor Family AT4G37260 51.497 2.17e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g01497 Myb_DNA-binding 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01497 K09422 - gmx:780556 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01365 11 35322562 35324053 Cca06g01497 06 29931816 29933800 PCT