Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01493 ATGGAAATGTTAGAACTTAGAAGCACAGCACACGAGCCCAACCCCTCTTTTCGGCTCGTTTACTTTCTCTTTCTCTGCCCCAAAGTGGCGAGCTACATTGATCTATATCCCAAACCTGCAAAAAGAGATCGAATAGTGTGCGTCGTCACTGACTCACCGAATTGCATTTGGAATCAATCAACCAAAGTGTCTGGACAAATTGGCGATGCACAAACTGAAGATAACTCAACCAAAGTGTCTGGACAAATTGGCAATGCACAAAGTGAAGAAAATAACTCAACCAATGTGTCTGGACAAATTGGCAATGCACAAACTGAAGAACATAACTCAACCAATGTGTCTGGACAAATTGGCAATGCACAAACTGAAGAACATCACTCAACCAATGTGTCTGGACAAATTGGCAATGCAAATGATTCCCCATCTTCATTACCTGCTTCTGGCATATCATCCTGGGCAAGACATCTGAAACTCCCACAGGCCCTTAGAGCGGCACAACAGAATTCACAAACTGAAAACACTGGCATATCAGCTTTTGCCCGCCTGACTAGTGGGCTTGGATTGCGAATGCCATCAAATGAAGCTGTTGCTGCTGCTGCTCCAGTCAATTCAGGTGCTGAACAGCCTAATTTGATTGAATCCTTCACCAAAGGTTTGGTGGACTCTTCCAAAAGTGCAGTAAAGGCAGTGCAGGTCAAAGCACGCCATATAGTCTCTCAAAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGATATGACATACATCACTGAAAATGTAATTGCTATGGGATTTCCGGGTGGTGATTTTAGCTCTGGAATTTTTGGATACATTGAGGGGTTCTATCGCAATCACATGGAAGAGGTGATCAAGTTTTTTGAAACACATCACAAGGGAAAGTACAAAGTATACAATCTTTGTTCAGAAAGGCTATATGATGGATCATTATTCCAGGGGAAGGTTGCATCTTTCCCATTTAGTGATCATAATTGCCCTCCTATTGAACTTATAGCATCATTTTGTCTAAGTGCATATTCATGGTTGAAAGAGGATATTCAAAATGTGGTGGTGGTTCATTGTAAAGCTGGTATGGGAAGGACCGGACTTATGATATGTAGTCTTCTTTTGTTTCTTAAGGCAAGTCATGATAATCAACTTCAAAGACTCTGGAATTTCTTCCCAACTGCAGAGGAAGCCATTGATTACTTTAACCACAAAAGATGTGTAGATGGAAAGGCTCTAGTTCTGCCTAGTCAGATCAGATATGTAAAATACTTTAAACGGACTTTAACACGCTTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCATGCTAAGAGGGTTTCGGCTTCACAAATGCCCATATTGGGTTAGACCATCTATTACAGTTTCTGATCATAATAATGAAATTCTTTTTACCACAAGAAAGCATCCCAAAACAAAGGATCTAATGCCAGAAGATTTCTGGATCAGTGCACCAAAGAAAGGAATTGTGGTTTTTGCACTACCAGGAGAGCCTGGTCTAGCTGAGTTGGTTGGAGACTTCAAAATTCATTTTCATGATCGACAGGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAACCGAACAATTTTGGATGGTTCAGATTTAGATGGTTTCGACAAGAGAAAGATCCCCTCTCCAGGATTCAAGGTGGAAGTTGTGATGATAGACTATAATGACACCCTACCTGCAACGACAAAAGCCAATCCTGCCAGCAAAGGATCTGATGGAAACACGAGCAATTCCTTACCTGGTCCAAAGCCTACTACATCTAATTCAAGTGAGAGTAAAGTTCCTAAAAATGACGATGATGTATTCTCAGACAGTGACGAAGAGGAGACCCGGGTTACACAAAGCAAGAAAGCTGCAACCGAGTACAAATTTATGGCACCTCATCAAGTATCTGAGGCAACAACAGACCATGAAGGGATGTTGGCACATAAAACGAATCAGTTGTCACTACAGCATCAGGAAAGCATGAAAAAACATGCTTCTGAAGAATCAACTACAGATAAACTTCATAATGTTCATGCAGGCAATATCAGCACAAACATGGGATCTGTAGGGGCAAGTGATATCAAGGCAATCGCAGCAGATGCTTCAGTTTTTTCGTTTGGAGATGAAGATTTTGAAAGTGATTGA 2175 0.4129 MEMLELRSTAHEPNPSFRLVYFLFLCPKVASYIDLYPKPAKRDRIVCVVTDSPNCIWNQSTKVSGQIGDAQTEDNSTKVSGQIGNAQSEENNSTNVSGQIGNAQTEEHNSTNVSGQIGNAQTEEHHSTNVSGQIGNANDSPSSLPASGISSWARHLKLPQALRAAQQNSQTENTGISAFARLTSGLGLRMPSNEAVAAAAPVNSGAEQPNLIESFTKGLVDSSKSAVKAVQVKARHIVSQNKRRYQEDGFDLDMTYITENVIAMGFPGGDFSSGIFGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVASFPFSDHNCPPIELIASFCLSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKASHDNQLQRLWNFFPTAEEAIDYFNHKRCVDGKALVLPSQIRYVKYFKRTLTRFNGEVQPGRRCMLRGFRLHKCPYWVRPSITVSDHNNEILFTTRKHPKTKDLMPEDFWISAPKKGIVVFALPGEPGLAELVGDFKIHFHDRQGDFYCWMNTTMTENRTILDGSDLDGFDKRKIPSPGFKVEVVMIDYNDTLPATTKANPASKGSDGNTSNSLPGPKPTTSNSSESKVPKNDDDVFSDSDEEETRVTQSKKAATEYKFMAPHQVSEATTDHEGMLAHKTNQLSLQHQESMKKHASEESTTDKLHNVHAGNISTNMGSVGASDIKAIAADASVFSFGDEDFESD 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01493 724 MobiDBLite consensus disorder prediction 575 635 - -
Cca06g01493 724 ProSiteProfiles Phosphatase tensin-type domain profile. 243 434 IPR029023 -
Cca06g01493 724 SMART PTEN_C2_2 439 568 IPR014020 -
Cca06g01493 724 ProSiteProfiles C2 tensin-type domain profile. 441 569 IPR014020 -
Cca06g01493 724 MobiDBLite consensus disorder prediction 67 100 - -
Cca06g01493 724 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 256 435 IPR029021 -
Cca06g01493 724 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 357 408 IPR000387 GO:0016311|GO:0016791
Cca06g01493 724 MobiDBLite consensus disorder prediction 575 607 - -
Cca06g01493 724 ProSitePatterns Tyrosine specific protein phosphatases active site. 359 369 IPR016130 GO:0016311|GO:0016791
Cca06g01493 724 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 119 724 - -
Cca06g01493 724 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 119 724 - -
Cca06g01493 724 CDD PTP_PTEN 253 429 IPR045101 GO:0016791
Cca06g01493 724 Gene3D Protein tyrosine phosphatase superfamily 228 437 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01493 Cca-Chr6 29868982 29878958 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01493 137 724 Protein tyrosine phosphatase (PTP) family AT3G19420 60.561 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01493 K01110 - gmx:100801622 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01493 06 29868982 29878958 Cca02g02556 02 46676447 46686734 PCT