Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01486 ATGGCCGTCGAGCTCATCATGGCCTTTAGGAACAACGACACCTTCGCCGAGGAGAATGCCGTTCGGGAAGCAGCATCGGGGTTAGAGAGCGTCGAGAAGCTCATAAGGTTGCTCTCACAAACCcaacaacaacaacaacaacaatatcacacatcaaACTCATCCATGGAAATTCAAACCGACGACTACAGGGCTGTCGCTGACGTCGCTGTCTCCAAGTTCAAGAAGGTCATTTCGCTTCTCGGCCGGACCCGGACCGGCCACGCGCGCTTCAGAAGAGCCCCTTTGCCTCCTCCGCCGCCGCCCCCACCGTCCGAGCCCCGAGTCTACCGTGCGACGCCGCTCCAGCAGATCCCGCCTCCCACCCTTCACGCCGACCCCAAAATTGAGAGAAAGGACTCTTCCAAGACCATTAATTTCTCCTACTCCAACTCCTTCGTCTCCTCCCTCACCGGAGACACCGACACTAAGCATCCCTGCTCGTCGGCGCCGGTGCCCGCCCCACCGCCAACGGGTTTTCAGATCACCAATCTCTCGCAGGTCTCCTCCGCGGGAAAGCCTCCTCTTTCTTCCTCTTCGTTGAAGAGAAAGTGTAGCTCTGAGAATTTGGGTTCTGCCAAGTGTGGCAGTTCCTCTGGCCGCTGCCATTGTTCTAAGAAGAGTAGAAAAATGAGGTTGAAGAGAGTGGTGAGGGTACCAGCAATAAGTTTGAAGATGGCTGATATTCCACCGGATGATTATTCTTGGAGAAAATACGGACAGAAACCCATTAAAGGATCTCCTCATCCAAGgggctattacaagtgcagcagcgtgagagggtgtccagcgaggaagcatgtcgagagggctttggatgatccatctatgttggtagtgacctacgaaggcgaacacaaccacACACTCTCTGCGGCTGAGGCTACTAATCTTATCCTAGAATCCTCTTAA 951 0.4627 MAVELIMAFRNNDTFAEENAVREAASGLESVEKLIRLLSQTQQQQQQQYHTSNSSMEIQTDDYRAVADVAVSKFKKVISLLGRTRTGHARFRRAPLPPPPPPPPSEPRVYRATPLQQIPPPTLHADPKIERKDSSKTINFSYSNSFVSSLTGDTDTKHPCSSAPVPAPPPTGFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSAKCGSSSGRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAAEATNLILESS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01486 316 MobiDBLite consensus disorder prediction 151 176 - -
Cca06g01486 316 Pfam Plant zinc cluster domain 195 241 IPR018872 -
Cca06g01486 316 SUPERFAMILY WRKY DNA-binding domain 240 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g01486 316 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 13 316 - -
Cca06g01486 316 ProSiteProfiles WRKY domain profile. 238 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g01486 316 SMART WRKY_cls 243 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g01486 316 Pfam WRKY DNA -binding domain 245 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g01486 316 Coils Coil 28 48 - -
Cca06g01486 316 MobiDBLite consensus disorder prediction 88 111 - -
Cca06g01486 316 Gene3D WRKY domain 230 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g01486 316 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 316 IPR044810 GO:0003700
Cca06g01486 316 MobiDBLite consensus disorder prediction 93 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01486 Cca-Chr6 29812427 29814704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01486 17 301 WRKY Transcription Factor Family AT2G24570 44.375 2.33e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca06g01486 WRKY 3.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01486 - - gmx:100804089 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01486 06 29812427 29814704 Cca11g02452 11 51575459 51577115 PCT