Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01481 atggaaggagagagagagaggaagaagcgagggagcgggcaggCACAGGCAGAGACACTAAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAAATAAGGGAACCCAACAAGCGTTCAAGGATTTGGCTCGGTTCCTATTCCACCCCCGTCGCCGCCGCACGAGCCTACGACACCGCCGTCTTCTACCTCCGGGGACCCTCCGCGCGCCTCAACTTCCCCGACCTTCTCGTCGGGGAAGGCGCCGCCGCCCTCCTCGCCGGCTGCGACATGTCTGCCGCTTCGATTAGGAAGAAGGCCACCGAGGTTGGTGCCAGGGTCGACGCTCTCCAGGCCACCCTCCACCACCCTCATGTTCCGCCTCCGCCGGAGCTTCTCTCCGGCGGCGGAGGCGGCGGTTCCGGGGACTTCGCCGAGCGGGTTGACCTCAATAAGATGCCCGAACCCGAGAGTTCCGACTGTGAGTGGGAGGTCAATTGA 495 0.5737 MEGERERKKRGSGQAQAETLRRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLVGEGAAALLAGCDMSAASIRKKATEVGARVDALQATLHHPHVPPPPELLSGGGGGGSGDFAERVDLNKMPEPESSDCEWEVN 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01481 164 MobiDBLite consensus disorder prediction 120 164 - -
Cca06g01481 164 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Cca06g01481 164 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Cca06g01481 164 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Cca06g01481 164 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Cca06g01481 164 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Cca06g01481 164 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Cca06g01481 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 158 - -
Cca06g01481 164 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Cca06g01481 164 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Cca06g01481 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 10 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01481 Cca-Chr6 29748956 29749985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01481 21 162 AP2-EREBP Transcription Factor Family AT5G67190 56.647 3.06e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca06g01481 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01481 K09286 - gmx:100783682 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01481 06 29748956 29749985 Cca11g01351 11 34990361 34991195 PCT