Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01479 ATGTGGGATCTCAACGACTCCCCTCGCCAGAGAAAGGACTACGAATCTGAACCATGCTCCTCTTCCATCAATGACGAcaaaggcaagagagtgggatctctctccaattccaGTTCCCTCGTCGAAGATGGATCCGAAGAAGAAGACAGTGACAGAGGTGCAACCGGAACCGCAACGTTCGACAAAAAAACCAGCAAAATTTTCGGTTTCCAGGTCACCCCAGATGACACTGACCACCCTCCGGTCACACGCCAGTTTTTTCCGCTCGAGGATTCAGAGACCGCTGCCGTCGCCGGTGGAAGCTCCTCCTTCCCACGTGCTCACTGGGTTGGTGTCAAATTCTGTCAATCGGAAACACTTGGCGCCGGGAAAGCAGTGAAAGTCTCGGAGCCCATGAAGAAAAGCCGGCGAGGACCACGTTCCCGGAGCTCGCAGTATCGCGGAGTTACGTTTTACAGAAGAACCGGTCGGTGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCGGCCATTAAGTTCCGGGGGGTGGAGGCGGACATCAACTTCAACATAGAAGACTATGAGGAAGACTTGAAGCAGATGAGCAATCTAACCAAGGAGGAGTTTGTGCACGTACTACGCCGACAAAGCACTGGATTTCCGAGGGGAAGCTCCAAATATAGAGGCGTCACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGTCAATTTTTGGGCAAAAAGTAG 783 0.4968 MWDLNDSPRQRKDYESEPCSSSINDDKGKRVGSLSNSSSLVEDGSEEEDSDRGATGTATFDKKTSKIFGFQVTPDDTDHPPVTRQFFPLEDSETAAVAGGSSSFPRAHWVGVKFCQSETLGAGKAVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01479 260 MobiDBLite consensus disorder prediction 1 24 - -
Cca06g01479 260 ProSiteProfiles AP2/ERF domain profile. 145 201 IPR001471 GO:0003700|GO:0006355
Cca06g01479 260 SMART rav1_2 145 207 IPR001471 GO:0003700|GO:0006355
Cca06g01479 260 MobiDBLite consensus disorder prediction 26 41 - -
Cca06g01479 260 Pfam AP2 domain 145 193 IPR001471 GO:0003700|GO:0006355
Cca06g01479 260 MobiDBLite consensus disorder prediction 1 58 - -
Cca06g01479 260 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 260 - -
Cca06g01479 260 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 260 - -
Cca06g01479 260 MobiDBLite consensus disorder prediction 126 145 - -
Cca06g01479 260 Gene3D AP2/ERF domain 144 203 IPR036955 GO:0003700|GO:0006355
Cca06g01479 260 CDD AP2 145 202 IPR001471 GO:0003700|GO:0006355
Cca06g01479 260 SUPERFAMILY DNA-binding domain 144 202 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01479 Cca-Chr6 29718218 29721365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01479 1 260 AP2-EREBP Transcription Factor Family AT4G36920 66.545 4.98e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca06g01479 AP2 2.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01479 K09284 - gmx:100786333 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01479 06 29718218 29721365 Cca11g01348 11 34785324 34789814 PCT