Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01476 ATGGCGTCGAAGCCGTCCCCTTCGCCCTCTTCTTCCAGATCGGAGCCTCTCGTCGATCCCTCCGCAACAAAAGTGGAGGTTGCAGGTCCGATGGTTAAAGACGTGTTACTGGTTATTGATTCTTTGAAGAAACAAGTTGCTGCGGAACGTGTTGTTTATGTTAAGAATAGAATAGAGGAAAACAGACAGAAGCTGGTTGGAGTCACAAACCATCTCTGCAAAATGTCAATGGAGAGAAGGAACTGCAGCATTACTGATACGGATAGAAGTCTGGACCTATTGACAAAGAGGCAAAAAGATGCAATAGATATGCACAATGGTGTTCATGCAAGTAATGGTGATATGGAGAGCAATGGCTATCATGAAGATAACCATGGTTCTACAGCAGTTCTTCTAGGGTCTAATGTTACTGTAAAGAATGCTGTTCGACCTATCAAGTTACCTGAAGTAAAAAGATTGCCTCCTTACACTACGTGGATTTTTCTGGACAGAAATCAAAGAATGACTGAGGATCAGTCAGTTGTAGGCCGGAGACGAATTTATTATGATCAAAATGGTGGCGAAGCACTTATTTGCAGTGACAGTGAGGAGGAAATTATGGAGGATGAAGAGGAGAAAAGAGAATTTATAGAATCAGAAGATTATATACTTCGCATGACTGTCAAAGAATTTGGTTTATCTGACATTGTTCTGGAGTCGTTGGGTCAGTGTTTTTCTAGAAACACTAATGAAATTAAGGCAAGGTATGAAACTCTTGGTGTTAAAGACAATGCTGGTGGGTGTTCCAAGGTTGGAGATTCTGAAGAGAATTCCCACAGTGGCAATTCTTTTCTAGAAAAGGATCTTGAAGCAGCTCTTGACTCTTTTGACAACCTTTTTTGTCGACGATGTCTTGTTTTTGATTGTAGATTACATGGATGTTCACAGGATCTTGTCTTCCCTGCTGAGAAGCAACCTACTTGGATCCCTCCTGATACTGAAAATGCACCATGTGGGCTAAATTGTTTCCGATTGGTGCTTAAGTCCGAAAGGTTTGCCAAAACATCCTCTGCCCAGGCTGATGGTGAAGAGAAAGGCTCTGGTGGTACTTTATCTAGTAGGAAAAAGCCTTCAGCTAAAAGGCGGTTAAAAAATAGCCAAAGTGAAAGTGCTTCATCTAATGCAAAGAACATATCTGAGAGTAGTGACTCAGAGAATGGTCCTGGACGTGATGCTGTTACAGCCTCCCAATCAGCACCTCCTAAAACTAAACCTGTGGGGAAAGGTGGAATTGGTAAGAGAAATAGTAAGCGAGTGGCAGAACGAGTCCTGGTTTGCATGCAGAAACGGCAGAAGAAAACAATGGTTTCTGATTCTGATTCCATTAGTGAAGCTGTTGATCATTCATCAAATGATATGGTCactgacccacatgcaatgagcagtgaagacaacacaaggaaagaagagtttgtggatgacaatgtttgtaaacAAGAAATAGTGGATAATAAATCTTGGAAAGCTCTTGAAAAGGGGCTTTTAGAGAAAGGAATGGAGATTTTTGGTAGAAACAGTTGCTTAATAGCTAGGAATCTCTTAAATGGTTTAAAGACATGCTGGGATGTTTTCCAATACATAAATTGTGAAGAAGGAAAGATGTCTGGTCCTCCTGGGGATGCTGCAAATTGTCTCTTGGAAGGCTATTCTAAGGGTAATAACGAAGTGAGACGAAGGTCTAGATTTTTACGTAGAAGAGGAAGAGTCCGTCGATTGAAGTACACCTGGAAATCTGCTGCTTACCATTCAATTAGGAAAAGGATTACAGAGAGAAAGGATCAACCCTGTCGGCAGTATAATCCATGTGGCTGCCAATCAGCTTGTGGAAAGCAGTGTCCTTGCCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGATGCCCCAAGAGCTGCAAGAATCGATTTCGTGGCTGTCATTGTGCTAAGAGTCAATGCCGAAGTCGTCAATGTCCATGCTTTGCTGCAGATAGGGAATGTGATCCAGATGTTTGTAGGAATTGTTGGGTCAGTTGTGGTGATGGTACTCTTGGGATTCCTAGCCAAAGAGGGGACAATTATGAATGTAGAAACATGAAGCTTCTTCTCAAACAGCAGCAAAGGGTTCTTCTTGGAAGGTCGGATGTATCAGGCTGGGGAGCCTTCTTAAAGAATAGTGTTGGTAAACATGAATACCTTGGAGAGTATACTGGAGAGTTGATTTCACATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAACGACCAGTTTGTTCTTGATGCTTATCGAAAGGGTGATAAATTGAAGTTTGCGAACCATTCTCCTGATCCAAATTGCTATGCaaagGTTATTATGGTTGCTGGAGATCATAGGGTAGGCATTTTTGCGAAGGAGCGGATTTGTGCCGGGGAGGAACTGTTCTATGATTATCGTTACGAGCCCGACAGGGCCCCTGCCTGGGCTCGGAAGCCAGAGGCGTCTGGATCAAAAAAAGAGGACGGGGCTCCTTCAAGTGGTCGTGCAAAGAAGCTTGCTTAA 2586 0.4142 MASKPSPSPSSSRSEPLVDPSATKVEVAGPMVKDVLLVIDSLKKQVAAERVVYVKNRIEENRQKLVGVTNHLCKMSMERRNCSITDTDRSLDLLTKRQKDAIDMHNGVHASNGDMESNGYHEDNHGSTAVLLGSNVTVKNAVRPIKLPEVKRLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYDQNGGEALICSDSEEEIMEDEEEKREFIESEDYILRMTVKEFGLSDIVLESLGQCFSRNTNEIKARYETLGVKDNAGGCSKVGDSEENSHSGNSFLEKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPTWIPPDTENAPCGLNCFRLVLKSERFAKTSSAQADGEEKGSGGTLSSRKKPSAKRRLKNSQSESASSNAKNISESSDSENGPGRDAVTASQSAPPKTKPVGKGGIGKRNSKRVAERVLVCMQKRQKKTMVSDSDSISEAVDHSSNDMVTDPHAMSSEDNTRKEEFVDDNVCKQEIVDNKSWKALEKGLLEKGMEIFGRNSCLIARNLLNGLKTCWDVFQYINCEEGKMSGPPGDAANCLLEGYSKGNNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQSACGKQCPCLQNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGIPSQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERICAGEELFYDYRYEPDRAPAWARKPEASGSKKEDGAPSSGRAKKLA 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01476 861 SMART set_7 712 833 IPR001214 GO:0005515
Cca06g01476 861 ProSiteProfiles CXC domain profile. 598 697 IPR026489 -
Cca06g01476 861 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 861 IPR025778 GO:0031519
Cca06g01476 861 MobiDBLite consensus disorder prediction 443 480 - -
Cca06g01476 861 MobiDBLite consensus disorder prediction 835 861 - -
Cca06g01476 861 MobiDBLite consensus disorder prediction 1 18 - -
Cca06g01476 861 MobiDBLite consensus disorder prediction 451 473 - -
Cca06g01476 861 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 8 457 - -
Cca06g01476 861 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 468 859 - -
Cca06g01476 861 Gene3D SET domain 612 829 IPR046341 -
Cca06g01476 861 MobiDBLite consensus disorder prediction 835 854 - -
Cca06g01476 861 SMART CXC_2 646 683 IPR033467 -
Cca06g01476 861 SUPERFAMILY SET domain 586 832 IPR046341 -
Cca06g01476 861 MobiDBLite consensus disorder prediction 347 427 - -
Cca06g01476 861 Pfam SET domain 723 826 IPR001214 GO:0005515
Cca06g01476 861 ProSiteProfiles SET domain profile. 712 827 IPR001214 GO:0005515
Cca06g01476 861 MobiDBLite consensus disorder prediction 1 21 - -
Cca06g01476 861 CDD SET_EZH 712 828 - -
Cca06g01476 861 Coils Coil 193 213 - -
Cca06g01476 861 MobiDBLite consensus disorder prediction 377 414 - -
Cca06g01476 861 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 8 457 IPR045318 GO:0006338|GO:0018024
Cca06g01476 861 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 468 859 IPR045318 GO:0006338|GO:0018024
Cca06g01476 861 Pfam CXC domain 650 681 IPR041355 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01476 Cca-Chr6 29669714 29678711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01476 701 830 C2H2 Transcription Factor Family AT2G23740 27.211 1.05e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca06g01476 SET 8.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01476 - K11430 gmx:100799832 1600.49