Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01473 ATGACTATGACTAAGGAGGAACAACAACAAAACCACATCGCTGGTCACAAAGAACAAGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAGCTGCGAGAGTTGACCCAAAAACATCCTTGGAACCTGATGGCTACGCCAGCGGACGAAGGACAACTTCTAGGCATGCTACTTAAGCTTATCAATGCTAAGAACACCATGGAAATAGGAGTATACACTGGTTACTCCTTGCTTTCCACTGCCCTCGCCCTACCACCTCACGGAAAGATCTTAGCTATGGATGTTAACCGGCAATATTATGAACTGGGGTTGCCTGTGATTCAAAAAGCTGGAGTGGCTCACAAGATTGACTTCAGAGAAGGACCTGCTCTTTCTCTTCTTGACCAACTCATCAAACAAGAAAAGAATAAGGGAACGTTCGATTTCATCTTCGTGGATGCTGATAAGGACAACTACTTGAACTACCACAAGAGGGTGATTGAGCTTGTGAAGGTTGGGGGACTGATCGGCTACGACAACACCCTATGGAACGGCTCCGTGGTCGCCCCACCCGATGCGCCTCTCATGAATTACATTAGGCATTATCGCCATTTTGTCATGGAGCTCAACAAAGCTCTTGCACTCGATTCAAGGGTCGAGATTTGCCAGCTTCCCGTTGGTGATGGGATTACCCTGTGCCGCCGCATCATCTGA 747 0.4739 MTMTKEEQQQNHIAGHKEQGHKSLLQSDALYQYILETSVYPREHESLKELRELTQKHPWNLMATPADEGQLLGMLLKLINAKNTMEIGVYTGYSLLSTALALPPHGKILAMDVNRQYYELGLPVIQKAGVAHKIDFREGPALSLLDQLIKQEKNKGTFDFIFVDADKDNYLNYHKRVIELVKVGGLIGYDNTLWNGSVVAPPDAPLMNYIRHYRHFVMELNKALALDSRVEICQLPVGDGITLCRRII 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01473 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
Cca06g01473 248 PANTHER CAFFEOYL-COA 3-O-METHYLTRANSFERASE 2 248 - -
Cca06g01473 248 MobiDBLite consensus disorder prediction 1 20 - -
Cca06g01473 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
Cca06g01473 248 PANTHER O-METHYLTRANSFERASE-RELATED 2 248 - -
Cca06g01473 248 Gene3D Vaccinia Virus protein VP39 12 248 IPR029063 -
Cca06g01473 248 CDD AdoMet_MTases 86 187 - -
Cca06g01473 248 Pfam O-methyltransferase 36 247 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01473 Cca-Chr6 29652056 29654018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01473 6 247 Monolignol Biosynthesis Gene Families AT4G34050 77.686 3.25e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01473 K00588 - gmx:100799303 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01473 06 29652056 29654018 Cca11g01339 11 34595876 34598061 PCT