Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01470 ATGGCGGACGCGGAGCCTGTAAGCGGGAGGCGAAGGCCGAGGGGACCAGAGGCCACCGCCCGCAGCGAAGCCCTGGAGCGTCTCAAGGCGCGCCTACGCGGCGGTCGCCGATCCGACGACACCGGCCCCCAAATCAGGTTAGAAAACCCTGTCTACGACACCGTCCCCGAGGACGAGTACAACGCCCTCGTCGCCAAGCGCCGCGAACAGGCGCGCTCCTTCATCGTCGACGATGAAGGACTTGGCTACGGCGACGAGGGCGAGGAAGAGGACTGGTCGCAGGCCGGATTCAACCTTTCCGACGACGAATCCGAAGGCGAATCGGAGAGGCCCAAACGGAAGAAGGTCGAGAAGAAGGACCCCCAGCCGAAACGGCCTTCTTCTTCGCTCTCCGCCGCCGCCGCCATGATGGGCGGCCAGAGACTCTCCTCCATGTTCACTTCCTCCGTTTTCAAGAAGAGCAGAGATGACAAAGCCTCCGAAAGCATCGTCGACGATGTGATTGCGGAGTTTGCTCCGGATGAGACTGATAGACTCAGGCGTAGAAAGGCTCAAACGATTTCATCCAATGTCGGATGCAGGGTTAGGGATAAGCCTTCTGCTGATTATTTGAACGCAGCTTCTTTGTTTCCGCCAAGTGCCAATGCTGAGTCTGTTAAAGTTGTTGTTGAGAGTAACGATTTTGACTCGGGGTTAGAGCAGAAGTGCGATGTGGTTAGTGAAGTTCAAGAGTTGGCTTGTGGAAATGGACAGGGACCAATGGTGGAAATGGAACACGATGATTGCAAAATTAACGAGGGTGTAGTTGAGGAGAAAGAGGTGAAGAACGTTGAAATTGAAGTTAAAACGGGTGCGAAAAAGGAGGTGTTCTCTTTGAATGCGAAGGTTAAAGATGAGGAAGATCCAGCACTGTCTGCGACTGCGGGTTGGAAGGAAGCGATAAACGGTGCTGGTGGGGTCAACGCTGCTGATTCGAAGGATGCTTTGCAGAACCAACAACAATCGGAGTTTGATTTGGAGGAAGATGGGTCATTGCCTTTCTATATATTAGATGCCTATGAGGAGTTTTATGGGGAAAATAGGGGTACCCTTTATCTGTTTGGGAAGGTCAAAACAGGGTGTTTCTATCAGAGTTGCTGTGTTATTGTGAAAAACATGCAGAGGTGTGTCTATGCAGTTCTAAGCCATCCTTTGCATCGCACTGAAGAGATGAGGAGTCTCGAGAGAGATGTCCAAGAGTCTCGTGTTTCTTCTGCAGACTTCTTTAAAAAGCTGCAGGACATGGTGTCTGATGTTAAGAATGAGATAGCACAGCATCTGGTGAATTTGGAAGTTTCTAACTTTAGCATGGCGCCTGTTAAGAGGAAATATGCATTTGAACGATCTGAAATACCTGCAGGTGAAAATTATGTGGTGAAAATCAATTATTCATTTAAGGATCCAGTACTTCCAGGAGATCTCAAAGGAGAAAATTTTTGTGCTCTCTTAGGAACAGGTTGCAGTGCGCTCGAGCTTTTCCTGATTAAAAGAAAGATAAAGGGGCCTTCATGGTTACAGGTTTCAAAGTTTTCTACAAGTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACCGTTGACTCTCCTAAAGACATAAAGAGTTCAGCTCCTTCAAAAATCACTTCTAAGATTCCTCCTGTGGTTGTTGCAGCGATGAGCTTGAAAACAATCATAAATGAAAAACAGAACACAAATGAGATTGTATCGGCATCCATTATATGTTGCAATATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGGCCTGGAAGGCTGACCCATTTTACTGTTATTCGTAAACTTGATGGGAATATATTTCCGATGGGATTCAATAAGGAGGTTACGGACAAAAACTTAAAAGCTGGTTCAAATGTTCTGTGTGCTGAAAGCAGTGAAAGAGCATTGTTAAATCGCTTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATGCCAGGCTCTCAAAGTAGGAAGCAACACGTGGTCTAGACTAGGCCGCCTCAACCGTTCTAAAATGCCTAAACTTGGAAGAAGAGGCAAGACTTTTGGTGCTGGAGCAGATCCTGGTATCATGTCTTGCCTTGCTGGTCGGCTTCTTTGTGATACCTACTTGTGTTCCCGGGACCTATTAAAGGAGGTTAGTTATTCTTTAACTCACCTTGCAAAATCACATCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAAGCAGCAGAATCCCTAATGGAACTTATTGAATACGGTGAAACAGATGCGTGGTTGTCTATGGAACTCATGTTTTATTTAAGTATTCTTCCGCTCACACGTCAGCTAACTAATATAAGTGGTAATCTTTGGGGAAAAACTCTTCAGGGTGGTCGAGCACAGAGAGTGGAGTATCTTTTGCTGCATACTTTTCATTCAATGAAATATATGGTGCCAGACAAGTTCTCAAACCATGCAAAAGAAACAAAATTGACGAAACGCAAAGTCACTAATGATGTTGAGGATAGCAACTTTGATGTAGATATTGACGATGCAAACTATGACAATGATGCTTCTGAAGCTGATCATAAGAAAAGCAAAAAGGGTCCTTCTTATGCCGGGGGATTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATTTGCTTCACAACTGTTGAAAGATCTTCGGACGAATCTTTTCCTCGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATTTGGTCGAGCGGAGGAAGAAGGTAAAGTCGTGGATAAAGAATGAAAAAAAGAAGAATGAAAAAGCTGATCCTATTAGAGTTCAGCAACTGGATATTCAACAGCAAGCACTGAAACTTACTGCAAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTCTATGCTAAGCCGTTAGCCGAGCTCATAACACTACAAGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGGTTATCTATGGCGATACTGATTCAATAATGATTTACAGCGGGCTAGATGATATTGAGGAAGCAAATAAAATTGCTGCAAGAGTTATTCAAGAGGTCAACAAGAAATATAAATGCTTGGAAATTGATCTTGATGGTTTATACAAAAGGATGTTGCTTCTTAAGAAAAAGAAGTATGCAGCTGTAAAGTTGATGTTTAGAGATCGCACCCCATACGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGTTTGTTAGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCGGGAGGGTCATGTGAAGATGTCGTGGAGTCAATCCACAACTCTCTCACGAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTTATTACAAAGACATTGACCAAACCTCCTGAAGCTTACCCCGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAGGCAACTAGGTTACTCTTCTGGCTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTATGAGCAGGGTGGTGCTTCAGGCAGTGCAGCTGGCATTGCACAACGTGCCCGACATCCTGATGAACTTAAACAAGAACAAGGGACTTGGTTGATTGACATTGATTACTATTTATCACAACAGATCCATCCTGTGGTATCCCGTCTTTGTGCATCAATTCAGGGCACAAGCCCAGAAAGACTGGCTAATTGTTTAGGGCTTGACTCGTCAAAGTATCATCATAAATCAAGTGAAGCTTTAAATGATGATTCTATAAACTCACTTTTGTTGGTTGCTGATGATGAGGAAAGGTATCGAAGATGTGAGCCGTTGATCTTGACATGCCCCAGCTGCTTTGGTACATTTGACTGTCCACCCGTCTTTAAATCTATTTGTTGTTTGTTGGGAAGTGAAAAACCAGCTGGTGTAATTTCGGAGGAATCTGACTACAATTTCTGGCGTAAGCTGTGCTGTCCTAAATGCCCAGAAGATGTTAAAATTTCTCCTGCAATGATATCTAATCAGGTCAAAAGGCAAGCAGAGAGGTTTGTTTTAATGTACTATAGAGGTTTACTAATGTGTGACGATGAAACGTGCAAGCATACGACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGAGAGAGGAACTGTATGTCCAAATTATCCTCGCTGCAACGGGCGATTACTGAGACAGTACACGGAAGCAGACTTGTACAGGCAGCTTTCATATTTTTGCCATGTGTTCGATACTGTTTCTTGCATAGAAAAGATGGAGACAAAATCCAGAATACCAATAGAGAAGGAGTTGATAAAAATTAGGCCGATGATTGATATGGCAGCATCAACAGCACAGAAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAGGCTGCAAGATCTGGTCATTGCAGTTTAA 4599 0.4375 MADAEPVSGRRRPRGPEATARSEALERLKARLRGGRRSDDTGPQIRLENPVYDTVPEDEYNALVAKRREQARSFIVDDEGLGYGDEGEEEDWSQAGFNLSDDESEGESERPKRKKVEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKASESIVDDVIAEFAPDETDRLRRRKAQTISSNVGCRVRDKPSADYLNAASLFPPSANAESVKVVVESNDFDSGLEQKCDVVSEVQELACGNGQGPMVEMEHDDCKINEGVVEEKEVKNVEIEVKTGAKKEVFSLNAKVKDEEDPALSATAGWKEAINGAGGVNAADSKDALQNQQQSEFDLEEDGSLPFYILDAYEEFYGENRGTLYLFGKVKTGCFYQSCCVIVKNMQRCVYAVLSHPLHRTEEMRSLERDVQESRVSSADFFKKLQDMVSDVKNEIAQHLVNLEVSNFSMAPVKRKYAFERSEIPAGENYVVKINYSFKDPVLPGDLKGENFCALLGTGCSALELFLIKRKIKGPSWLQVSKFSTSQRVSWCKFEVTVDSPKDIKSSAPSKITSKIPPVVVAAMSLKTIINEKQNTNEIVSASIICCNMVKIDTPMLASEWKRPGRLTHFTVIRKLDGNIFPMGFNKEVTDKNLKAGSNVLCAESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRCQALKVGSNTWSRLGRLNRSKMPKLGRRGKTFGAGADPGIMSCLAGRLLCDTYLCSRDLLKEVSYSLTHLAKSHLNKFRKEVAPHEVPKMFQAAESLMELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGGRAQRVEYLLLHTFHSMKYMVPDKFSNHAKETKLTKRKVTNDVEDSNFDVDIDDANYDNDASEADHKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDESFPRLPSSKTTGVLPEVLKNLVERRKKVKSWIKNEKKKNEKADPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIEEANKIAARVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLMFRDRTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLTKVQEEMRNGQVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLRQLGYSSGCSVGDTIPYIICYEQGGASGSAAGIAQRARHPDELKQEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLANCLGLDSSKYHHKSSEALNDDSINSLLLVADDEERYRRCEPLILTCPSCFGTFDCPPVFKSICCLLGSEKPAGVISEESDYNFWRKLCCPKCPEDVKISPAMISNQVKRQAERFVLMYYRGLLMCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLLRQYTEADLYRQLSYFCHVFDTVSCIEKMETKSRIPIEKELIKIRPMIDMAASTAQKIRDRCAFGWVRLQDLVIAV 1532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01470 1532 Coils Coil 1065 1099 - -
Cca06g01470 1532 MobiDBLite consensus disorder prediction 1 57 - -
Cca06g01470 1532 Pfam DNA polymerase family B 816 1285 IPR006134 GO:0000166|GO:0003677
Cca06g01470 1532 CDD DNA_polB_alpha_exo 557 808 - -
Cca06g01470 1532 MobiDBLite consensus disorder prediction 1 43 - -
Cca06g01470 1532 Pfam DNA polymerase family B, exonuclease domain 377 750 IPR006133 -
Cca06g01470 1532 MobiDBLite consensus disorder prediction 103 124 - -
Cca06g01470 1532 ProSitePatterns DNA polymerase family B signature. 1053 1061 IPR017964 GO:0000166|GO:0003676
Cca06g01470 1532 PRINTS DNA-directed DNA-polymerase family B signature 915 928 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca06g01470 1532 PRINTS DNA-directed DNA-polymerase family B signature 998 1010 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca06g01470 1532 PRINTS DNA-directed DNA-polymerase family B signature 1051 1059 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca06g01470 1532 MobiDBLite consensus disorder prediction 78 138 - -
Cca06g01470 1532 Gene3D - 347 543 - -
Cca06g01470 1532 Gene3D - 557 872 IPR036397 GO:0003676
Cca06g01470 1532 SUPERFAMILY DNA/RNA polymerases 890 1301 IPR043502 -
Cca06g01470 1532 Pfam DNA Polymerase alpha zinc finger 1326 1528 IPR015088 GO:0003887|GO:0006260
Cca06g01470 1532 Gene3D - 387 513 - -
Cca06g01470 1532 Gene3D Helix hairpin bin 956 1011 - -
Cca06g01470 1532 Gene3D - 1129 1316 IPR042087 -
Cca06g01470 1532 CDD POLBc_alpha 891 1301 IPR045846 GO:0003887|GO:1902975
Cca06g01470 1532 MobiDBLite consensus disorder prediction 81 96 - -
Cca06g01470 1532 Gene3D Palm domain of DNA polymerase 884 1114 IPR023211 -
Cca06g01470 1532 SMART polmehr3 557 1065 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca06g01470 1532 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 16 1530 - -
Cca06g01470 1532 Gene3D DNA Polymerase alpha, zinc finger 1325 1517 IPR038256 -
Cca06g01470 1532 TIGRFAM pol2: DNA polymerase (pol2) 51 1283 - -
Cca06g01470 1532 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Cca06g01470 1532 SUPERFAMILY Ribonuclease H-like 341 845 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01470 Cca-Chr6 29619955 29633406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01470 2 1530 Core DNA Replication Machinery Family AT5G67100 59.640 0.0 1795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01470 K02320 - gmx:100798779 2592.76