Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01469 ATGCCAGCTGCATTCTTTTTTGTACGGTTTCTCATTCTCTATTTTCTTCTCTTCTTCACACGAGTGGAGGAACAAGGCCTACTTCTCTTGCAAATTGCAATGCCCGATCACTccaccaccaccaccaccGCAATGAACGACCAGCTCTCCAACCCTACCTCCATCTTCGGCCTCCGCCTGTGGGTGGTTCTCGGCGTCTGCGTCGGCGCCGCCATCGTCCTCCTCCTCTTCCTCATCTCAATCTGGCTCGCCTTCAAGCGCTCCAAAACCAACCCCGTTTCCATCCCCGACGTCTCCAAGGAGATCCAAGAAATCAGGCTCGACACCACCCACGCGCCCAATCCCACCCTCCAACCCGACCCTTTTCCCGACCCTGACCCTCTTCCCGCCGCCGAACGTCACTCCGAGGAGGAAACCAACCCCTACCACCGGATTCAGTTCGAGATTGGGAAGAACCACCGAATCTCCTACCCCGAACGTGCCTTGCTTCGCTCCTCTTCCAACGACGAGGCTCATGCTCAGGCTCAGGTTCAGCCTCCCACCGTCATTCCTGAAGTTTCTCACTTGGGTTGGGGCCACTGGTACACTCTAAGGGAACTCGAGGATTCCACTAACGGCTTTGCCCCTGATAATGTTATTGGCGAAGGTGGATATGGAATTGTTTATCATGGTATCTTGAACGATAACACTCATGTTGCTATTAAGAATTTGCTCAATAATAGGGGGCAAGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCTATAGGACGAGTTCGCCACAAGAATCTAGTGAGGTTGCTTGGTTATTGCGCTGAAGGAGCTCATAGGATGCTTGTTTATGAGTTCGTTGACAATGGTAACTTGGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCACTAACTTGGGAAATTCGGATGAACATTATTCTGGGAACGGCTAAAGGATTAACTTATCTTCACGAGGGGTTGGAACCAAAAGTTGTTCACCGTGATATTAAATCAAGCAACATTTTGCTTAGTAAGCAGTGGAATGCAAAGGTGTCGGACTTTGGCCTCGCGAAACTCCTTGGCTCTGACAACAGCTATATTACAACCCGTGTCATGGGTACATTTGGGTTTGTATAG 1131 0.496 MPAAFFFVRFLILYFLLFFTRVEEQGLLLLQIAMPDHSTTTTTAMNDQLSNPTSIFGLRLWVVLGVCVGAAIVLLLFLISIWLAFKRSKTNPVSIPDVSKEIQEIRLDTTHAPNPTLQPDPFPDPDPLPAAERHSEEETNPYHRIQFEIGKNHRISYPERALLRSSSNDEAHAQAQVQPPTVIPEVSHLGWGHWYTLRELEDSTNGFAPDNVIGEGGYGIVYHGILNDNTHVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEFVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNAKVSDFGLAKLLGSDNSYITTRVMGTFGFV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01469 376 SUPERFAMILY Protein kinase-like (PK-like) 184 375 IPR011009 -
Cca06g01469 376 PANTHER RECEPTOR-LIKE KINASE PLANT 39 376 - -
Cca06g01469 376 ProSitePatterns Protein kinases ATP-binding region signature. 213 235 IPR017441 GO:0005524
Cca06g01469 376 PANTHER OS01G0323000 PROTEIN 39 376 - -
Cca06g01469 376 Gene3D Phosphorylase Kinase; domain 1 172 282 - -
Cca06g01469 376 SMART serkin_6 207 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01469 376 MobiDBLite consensus disorder prediction 127 143 - -
Cca06g01469 376 Pfam Protein kinase domain 210 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01469 376 ProSiteProfiles Protein kinase domain profile. 207 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01469 376 Gene3D Transferase(Phosphotransferase) domain 1 283 376 - -
Cca06g01469 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Cca06g01469 376 MobiDBLite consensus disorder prediction 110 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01469 Cca-Chr6 29612651 29615835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01469 184 374 Trihelix Transcription Factor Family AT1G23540 50.521 5.35e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca06g01469 Pkinase 1.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01469 - - gmx:100797726 585.874