Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01467 ATGAATTGGATTCGCGGTGACTCGCTCGGAACTGGAAGCTTCGCCACCGTCAACAAGCTCGTACCCACACACACTTCCGCTCACTTTTTTCCTTCTCCCACCGCCGTCAAATCCTCCGACCTTCACACCGCCGCTTCCCTCAAGAACGAGAAGGAGATTCTCGATCGCATTCGCCACTCCCCTTACATCATCAAATGCTACGGCCACGATTCTACCATCGAAAACGGCCAGGAGTTTTACAACGTCTTTCTCGAACACGCCGCCGGCGGTTCCCTCGCCGATCAGCTCAAAAAACACGGCGGGACCCTCCCGGAGAGTTACGTTCGGCGCTGCACCAGGTCTGTCGTGGAAGCTCTCAGGCACATTCACGCCGAAGGTTTTGTTCACTGCGACGTGAAGCTGCAGAACATTCTCGTGTTCGACGATGACGAGGTTAAAGTCGCGGACTTTGGGCTGGCGAAGGAGAAGGGGAGAAAAGAGGGGAAGTGGGAGTGTCGTGGGACGCCGCTGTTCATGTCGCCGGAAGCGGTGAACGAGAACGAGTACGAGTCGGCGGCGGATATTTGGGCCTTGGGCTGCGCCGTGGTGGAGATGGTGACGGGAAAGCCCGCTTGGGAAGTTCGAAGCGGGGTGAATATTTGGGCTTTGTTGATACGGATTGGGGTTGGAGAGGAGTTGCCGAAGATTCCAGAAGAGTTGTCGGAAGAGGGGAAGGATTTTTTAAGGAAGTGTTTCGTTAAGGATCCTAATACGAGGTGGAGTGCTGAGATGCTTTTGGAACATCCTTTTATTAACGATCACTGTGTTTCTTTTAAGAAAGTCAATGGGTCGTTGCCGTCGCCGTCGCCGAGGACCCACTTTGATTTCCCTGACTGGGCTTCCACCGTGACGTCTTCGCTTCCTTCCTCCCCGGACTCCGGCGAGTGGTGTCAGGGGGAATTCAGTTTGTCGTGTTCGCCGGCGAGTCGTCTCCGGCGGTTGGGCACTGATGAATTGGTTCCGATGGGTTGGTCGGGATCGGATGACTGGATTGACGTAAGGTGA 1044 0.5508 MNWIRGDSLGTGSFATVNKLVPTHTSAHFFPSPTAVKSSDLHTAASLKNEKEILDRIRHSPYIIKCYGHDSTIENGQEFYNVFLEHAAGGSLADQLKKHGGTLPESYVRRCTRSVVEALRHIHAEGFVHCDVKLQNILVFDDDEVKVADFGLAKEKGRKEGKWECRGTPLFMSPEAVNENEYESAADIWALGCAVVEMVTGKPAWEVRSGVNIWALLIRIGVGEELPKIPEELSEEGKDFLRKCFVKDPNTRWSAEMLLEHPFINDHCVSFKKVNGSLPSPSPRTHFDFPDWASTVTSSLPSSPDSGEWCQGEFSLSCSPASRLRRLGTDELVPMGWSGSDDWIDVR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01467 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Cca06g01467 347 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01467 347 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01467 347 Gene3D Transferase(Phosphotransferase) domain 1 94 282 - -
Cca06g01467 347 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Cca06g01467 347 CDD STKc_MAPKKK 2 264 - -
Cca06g01467 347 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Cca06g01467 347 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 300 - -
Cca06g01467 347 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01467 347 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
Cca06g01467 347 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01467 Cca-Chr6 29595386 29596766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01467 1 347 MAP Kinase Kinase Kinase AT3G50310 51.934 1.74e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca06g01467 Pkinase 3.9e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01467 - - gmx:100797177 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01467 06 29595386 29596766 Cca11g01325 11 34255550 34257246 PCT