Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01465 ATGGACGTGGACATTCTCAAAACTTCTACCAGTGACACCAGCATGGACATGATGATGATCATGCAAATGGATCAAAAGTTCCCTGAATTATGTGAACCTTTTTATAACCACAACACTACTAGTACTACTCTCCTCCACCCAGAAACCGACTTCTTAACCTCCACCACCACTCTTCCCGTCTTCTCTAACCCAAACGTCATAACTCCATCGCCCACTTTCATCAACACGCCACCCTCTTCCTCTAACTTCCTTCTCCAACAACCCATGACACCTCCTCTTCAACCCAACCCTTCATTTTCGGAGAAGAAAAACTCTGTGGCGGCCATGAGGGAGATGATTTTCCGCGTAGCGGTTATGCAACCTATTCACATAGACCCGGAATCCATCAAGCCACCCAAGAGACGGAACGTGAAGATTTCCAAGGACCCGCAGAGCGTGGCGGCGAGGCACAGAAGAGAGAGGATTAGCGAGAGAATAAGGATCCTTCAGAGATTAGTTCCTGGTGGTACCAAAATGGACACGGCTTCCATGCTTGATGAAGCCATACACTACGTCAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCAGGGGCGAGTAGACCCTTGAACATTGTCGGATTCCCTGCTACCACTGTGTCCAACGCCAACAACGTTAATTATTCTGCTTTTGTCAAGAGTTGCCAACCGTGTCAAATCACGCCTTCTGCAGCTTCTAAACAAATGCTCACTTGA 738 0.477 MDVDILKTSTSDTSMDMMMIMQMDQKFPELCEPFYNHNTTSTTLLHPETDFLTSTTTLPVFSNPNVITPSPTFINTPPSSSNFLLQQPMTPPLQPNPSFSEKKNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPLNIVGFPATTVSNANNVNYSAFVKSCQPCQITPSAASKQMLT 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01465 245 PANTHER TRANSCRIPTION FACTOR HEC2 1 235 - -
Cca06g01465 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 198 IPR036638 GO:0046983
Cca06g01465 245 Coils Coil 178 198 - -
Cca06g01465 245 CDD bHLH_AtIND_like 140 196 - -
Cca06g01465 245 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 235 IPR045843 GO:0003700|GO:0006355
Cca06g01465 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Cca06g01465 245 Pfam Helix-loop-helix DNA-binding domain 149 188 IPR011598 GO:0046983
Cca06g01465 245 SMART finulus 145 194 IPR011598 GO:0046983
Cca06g01465 245 Gene3D - 138 204 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01465 Cca-Chr6 29579478 29580580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01465 25 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 58.564 7.77e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g01465 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01465 - - gmx:100796649 340.887