Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01463 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGCATTCCGTGGGATGTCGATACGGAGGGATTAAGAGAGTATATGAGCAAGTTTGGTGAGCTTGAAGATTGCATTGTCATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTCACATTTGCTTCTGTGGATGATGCTAAGGAAGTATTATCAAGTGAACATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTAGCCACACCAAAGGAGGAAATGAGGGCACCAGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTTCGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTGTACATGCCAAAGGATCAAGGGTCCAAAATGCATCGTGGAATTGGTTTCATTACTTTTGCAAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACACCCAAGGATGATGACTTTAAGCCAATTGGCAGAATGCCACAAGGAGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGACGGGGAGAGCCCGCTCGGAGAACTAGTAAAAAGATTTTTGTTGGCCGTCTTCCCCCAGAGGCAACTGCTGAGGATCTTCGCCAATATTTTGGAAGATTTGGCCGGATATTAGATGTTTATGTTCCAAGGGATCCGAAGAGAACAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACATCAGGTAGCAATAGATTCGGCTACGCCTGTTGATGATGCAGGGCCCAGTGGGAATTTTATGATGAACAGTATGGAATCTTTTGGGGGATATGGTGGTCCTGTGCGATCTTATGGGAGGATGTATGGTAGCTTAGACTTTGACGATTGGGGTTACGGAATTGGGAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1077 0.4438 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDDDFKPIGRMPQGGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGEPARRTSKKIFVGRLPPEATAEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMNSMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRADWRYRPY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01463 358 SUPERFAMILY RNA-binding domain, RBD 89 190 IPR035979 GO:0003676
Cca06g01463 358 SMART rrm1_1 93 164 IPR000504 GO:0003723
Cca06g01463 358 SMART rrm1_1 5 76 IPR000504 GO:0003723
Cca06g01463 358 SMART rrm1_1 226 297 IPR000504 GO:0003723
Cca06g01463 358 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Cca06g01463 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 301 IPR000504 GO:0003723
Cca06g01463 358 PANTHER OS01G0945800 PROTEIN 3 358 - -
Cca06g01463 358 SUPERFAMILY RNA-binding domain, RBD 221 324 IPR035979 GO:0003676
Cca06g01463 358 Gene3D - 217 304 IPR012677 -
Cca06g01463 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Cca06g01463 358 Gene3D - 88 174 IPR012677 -
Cca06g01463 358 Gene3D - 1 87 IPR012677 -
Cca06g01463 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Cca06g01463 358 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 358 - -
Cca06g01463 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Cca06g01463 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Cca06g01463 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 281 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01463 Cca-Chr6 29534936 29539693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01463 17 273 Eukaryotic Initiation Factors Gene Family AT2G36660 23.954 1.46e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01463 K14411 - gmx:100795240 715.687