Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01459 ATGGGATTCAATAAGGAGGTTACGGACAAAAACTTAAAAGCTGGTTCAAATGTTCTGTGTGCTGAAAGCAGTGAAAGAGCATTGTTAAATCGCTTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATGCCAGGTTTCAAAGTTTTCTACAAGTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACCGTTGACTCTCCTAAAGACATAAAGAGTTCAGCTCCTTCAAAAATCACTTCTAAGATTCCTCCTGTGGTTGTTGCAGCGATGAGCTTGAAAACAATCATAAATGAAAAACAGAACACAAATGAGATTGTATCGGCATCCATTATATGTTGCAATATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGGCCTGGAAGGCTGACCCATTTTACTGTTATTCGTAAACTTGATGGGAATATATTTCCGATGGGATTCAATAAGGAGGTTACGGACAAAAACTTAAAAGCTGGTTCAAATGTTCTGTGTGCTGAAAGCAGTGAAAGAGCATTGTTAAATCGCTTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCaagaaaataaataa 684 0.3743 MGFNKEVTDKNLKAGSNVLCAESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRCQVSKFSTSQRVSWCKFEVTVDSPKDIKSSAPSKITSKIPPVVVAAMSLKTIINEKQNTNEIVSASIICCNMVKIDTPMLASEWKRPGRLTHFTVIRKLDGNIFPMGFNKEVTDKNLKAGSNVLCAESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLQENK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01459 227 SUPERFAMILY Ribonuclease H-like 64 224 IPR012337 -
Cca06g01459 227 Gene3D - 100 227 IPR036397 GO:0003676
Cca06g01459 227 Gene3D - 1 96 IPR036397 GO:0003676
Cca06g01459 227 PANTHER DNA POLYMERASE 63 221 - -
Cca06g01459 227 Pfam DNA polymerase family B, exonuclease domain 4 62 IPR006133 -
Cca06g01459 227 Pfam DNA polymerase family B, exonuclease domain 64 224 IPR006133 -
Cca06g01459 227 SUPERFAMILY Ribonuclease H-like 18 76 IPR012337 -
Cca06g01459 227 PANTHER DNA POLYMERASE 1 56 - -
Cca06g01459 227 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 63 221 - -
Cca06g01459 227 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01459 Cca-Chr6 29489255 29491384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01459 1 77 Core DNA Replication Machinery Family AT5G67100 64.935 3.36e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01459 K02320 - ccaj:109800507 363.614