Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01456 ATgttgcaacgatcggtgccggcaccgttcttgacgaagacatatcaattggtggatgatccaagcacggatgaggtgatatcgtggagcgagagtggcgacactttcgtggtgtggaaaaatgcggattttgcaaaggatttgcttcctaattatttcaagcacaataatttctccagctttgttcgtcaactcaacacctatGGATTTCGAAAGATTGTGCTAGACAAATGGGAATTCGCGAACGAAAACTTCAAACGAGGGAATAAGGAGCTTCTCTCCAAGATCAAACGGCGTAAGATCGTGCCGCAACCGCCGGCGAATCCATCGGAGGCCGGAAACGGAAACTCTCCGTCAAACTCCAGGGGAGAAGAGGCGGGGTCCACATCAACGTCGCCGTCATCGTGCTCCGGTTCGAAGAACCCAGGATCGATGGACACAACAGCTTCTCGCGAGTTATGGAGCAAGAACGAGAAACTGAAGAAGGACAACAAGACGCTGAGTTGCGAGCTGGCACGTGCAAGAAAGCAGTGCGACAAGCTTGTTACTTTTTTGAGGGACCGTCTGATGGTGGGTCCCGATCAGATCGATGACATCATGCGGCGAGGATGTGAGGACGCGGTAGGTGAAGGTGGAGGAGGAGACTATTTGAAACTGTTTGGTGTTTGGTTGAAAAAGGATATGCTAACGGACAAACCTAGCAATGGCCACAACAAAAGAGGCCGCGAAGACCAAATGGGCTTCGCTGGGCCTCGCCTCAACGACTTTGGAGCTGTGAAAGTCATCATGAAGAGCAACTGA 801 0.387 MLQRSVPAPFLTKTYQLVDDPSTDEVISWSESGDTFVVWKNADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVLDKWEFANENFKRGNKELLSKIKRRKIVPQPPANPSEAGNGNSPSNSRGEEAGSTSTSPSSCSGSKNPGSMDTTASRELWSKNEKLKKDNKTLSCELARARKQCDKLVTFLRDRLMVGPDQIDDIMRRGCEDAVGEGGGGDYLKLFGVWLKKDMLTDKPSNGHNKRGREDQMGFAGPRLNDFGAVKVIMKSN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01456 266 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 3 255 - -
Cca06g01456 266 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01456 266 Gene3D - 2 100 IPR036388 -
Cca06g01456 266 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01456 266 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 3 255 IPR027725 -
Cca06g01456 266 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Cca06g01456 266 Coils Coil 157 177 - -
Cca06g01456 266 MobiDBLite consensus disorder prediction 109 151 - -
Cca06g01456 266 MobiDBLite consensus disorder prediction 96 157 - -
Cca06g01456 266 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01456 266 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01456 266 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g01456 266 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01456 Cca-Chr6 29460292 29462340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01456 3 225 HSF AT4G36990 55.649 3.86e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca06g01456 HSF_DNA-bind 2.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01456 K09419 - gmx:100791543 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01456 06 29460292 29462340 Cca11g01309 11 33647366 33651225 PCT