Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01437 ATGGGTCTCTGCACTTCGAAACCCACTCTTTCATCTACCCAATCAGCTTCTCACTCACCCGCGCCGCCTCCACTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCGCGCCGCCTCAAAACGACGCCGTCACGCTCACTCGCAGTTCCGAACCTCACGCGAGTTCCGCCAACAATGGCCAAAACCCTAACGAGCCGGAGAACGGCAAGAGATCTCCGTTTTTCCCGTTCTACAGTCCGAGTCCGGGGCGCTACGTGTTCCCGCTCTCGCCGCGGCGGTTTTTCAAGCGGCCGTTTCCGCCGCCGTCGCCGGCGAAGCACATAAGGGCGGCGCTGGCTCGGCGGCACGGTTCAGTGAAGCCCAACGAGGCTCCCATACCGGAGGCAGAGGCGGTCTCCGGGCTCGACAAGAACTTCGGATTCTCCAAGCATTTTGGAAGTAAGTATGATGTCGGAGACGAGGTTGGGAGAGGGCATTTTGGGTACACTTGTGTTGCCAAGGTGAAGAAAGGAGAGATGAAAGGCCAACAAGTGGCCGTTAAAGTCATTCCAAAAGCCAAGATGACTACTGCAATTGCTATTGAGGATGTGAGAAGGGAAGTAAAAATATTGAGAGCTTTGACTGGACACAAGAATCTAGTACAATTCTATGATGCGTATGAAGACCATGATAATGTCTATATAGTAATGGAGTTGTGTGAAGGAGGAGAGCTGTTGGACAGAATATTATCAAGAGGTGGGAAGTACACAGAGGAAGATGCAAAAGCTGTCCTGAGACAAATACTGAACGTTGTTTCTTTTTGCCATCTGCAGGGTGTTGTGCATCGTGATCTTAAACCTGAGAACTTCTTGTTCACATCCAAGGACGAAAACTCAAAGCTAAAGGCCATCGACTTTGGGTTGTCAGATTTTGTTAAACCAGATGAAAGACTTAATGATATTGTTGGCAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGAGCTTACAGTACAGAGGCTGATGTCTGGAGTATTGGAGTGATTGCATATATTTTATTATGTGGCAGTCGTCCGTTCTGGGCCCGGACTGAGTCTGGTATCTTTCGTGCTGTATTGAAAGCTGATCCATGTTTTGATGAACCTCCTTGGCCTTCTCTATCAGATGAGGCAAGGAATTTTGTTGAGCGATTACTAAATAAAGATCCACGGAAAAGAATGTCTGCAGCACAGGCATTAAGTCATCCATGGATTAAAAGCAAGGATGTAAAAGTACCTCTGGATATTCTAACATTCAAGCTCTTGAAGGCATACATGCGTTCCTCATCTCTACGAAAAGCAGCTTTAAGGGTATGTGTTTTTATGTAA 1560 0.4051 MGLCTSKPTLSSTQSASHSPAPPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPPQNDAVTLTRSSEPHASSANNGQNPNEPENGKRSPFFPFYSPSPGRYVFPLSPRRFFKRPFPPPSPAKHIRAALARRHGSVKPNEAPIPEAEAVSGLDKNFGFSKHFGSKYDVGDEVGRGHFGYTCVAKVKKGEMKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVLRQILNVVSFCHLQGVVHRDLKPENFLFTSKDENSKLKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPCFDEPPWPSLSDEARNFVERLLNKDPRKRMSAAQALSHPWIKSKDVKVPLDILTFKLLKAYMRSSSLRKAALRVCVFM 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01437 519 Pfam Protein kinase domain 220 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01437 519 MobiDBLite consensus disorder prediction 1 32 - -
Cca06g01437 519 MobiDBLite consensus disorder prediction 113 139 - -
Cca06g01437 519 SUPERFAMILY Protein kinase-like (PK-like) 217 499 IPR011009 -
Cca06g01437 519 MobiDBLite consensus disorder prediction 1 20 - -
Cca06g01437 519 SMART serkin_6 220 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01437 519 CDD STKc_CAMK 219 481 - -
Cca06g01437 519 ProSitePatterns Protein kinases ATP-binding region signature. 226 252 IPR017441 GO:0005524
Cca06g01437 519 PANTHER SERINE/THREONINE-PROTEIN KINASE 126 515 - -
Cca06g01437 519 Coils Coil 25 25 - -
Cca06g01437 519 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 126 515 - -
Cca06g01437 519 MobiDBLite consensus disorder prediction 94 147 - -
Cca06g01437 519 Gene3D Phosphorylase Kinase; domain 1 213 309 - -
Cca06g01437 519 Gene3D Transferase(Phosphotransferase) domain 1 310 507 - -
Cca06g01437 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Cca06g01437 519 ProSiteProfiles Protein kinase domain profile. 220 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01437 Cca-Chr6 29255375 29258927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01437 140 514 EF-hand Containing Proteins AT3G50530 74.353 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca06g01437 Pkinase 3.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01437 K00924 - gmx:100794177 735.332