Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01434 ATGCGTTGGTTACCCACCCTCCACTTCTCCCCTTCtcatcattcccattcctcatcctcatcctcgtctctcCCGGAGCCAAGGAAGAGCACGCGTTCCATCTGGTTCTTCGGCAGCGCCAAGAAGTCTACGCGCTCCAGGAAGCTCCGCCACGTCACCGACTTAGAGGCCGTCGTAGGGCCCCCCTTGGCCTTGTCTCGCTCCTCCAGCACCGTTGATCGCTCCTCCCTCGTGCCTCAGCCCTTGCCCTTGCCCAGAGACCGCTTCCCCAAAGATGCCGCCGACACGCCCGCCGCCGTCGACGTTTCCCTCACCGCCGGTTTCAAAATGCGCAGTGTTTTTGCGAGCCAAGAGACAAGAAAAAACATGGCGCAGGTGGAAACAAGGTCAACAGGGACAGGGTTGATGACGggtcagggtcaaggtcaaggtcaaggtcaatgtcaaggAGATAGTACCTTGTGGACAAGCATCCCTACAAGAAGTGCTCCAACGAGTCCTTTTGGGAGTCCCATAATAAGCCCAAAGAATGCAAAAACTGACGATTTCATACCCTACTATTACGTTTCACCCAAAGCCAACCAGTTCTGGTCCGCACCAGAGATGCCCATAAACGACCCTTCACCACCCCCTGCTTTCTTTGACATATCCGCACTACGCACTTCGGATAACCCTCCTTCTCCCCATCATAGCCCACGGGGAAAAAGCCCAACTGCCCCTTCCCCTTCTTGTTCCTCCATACCCCCCAGGTTATCCCTTGACACCTCAATAGCACGACGTGAAACTCTCACTGTCCACCCCTTACCCTTGCCTCCTTGGGCTCCCTTACCTTCACCACCTCCCACCTTTTCCCCACCCCTCGCTAAGACAGAATGCCACCCAATGATAAACCAATGGCAAAAAGGCAAACTCATTGGCCGTGGTACTTTTGGATCAGTTTATGTTGCCACCAATAGAAAAACCGGAGCATTGTGTGCAATGAAGGAAGCAGAAATATTTTCTGATGATCCAAAATCTGCAGAGTGCATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCCATCTGAAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATAGTAGAGGACAGGTTTTATATTTATTTGGAATATATCCATCCCGGGTCAATGAATAAATACGTTCGTGAACATTGTGGTGCAATAACAGAATGTGTTGTGAGGAGTTTCACGCGCCATATTCTTTCGGGGTTGGCTTACTTGCATAGCAAGAAAACAATTCATAGGGACATCAAGGGGGCTAACTTACTTGTTGATTCAGCTGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAACACCTAACTGGACATGTTGCAGATCTTTCTCTGAAGGGAAGTCCATATTGGATGGCTCCAGAGCTTATGCAAGCGGTTGTGCAAAAAGACAACAGCTCTGATCTTGCTTTTGCCGTTGATATTTGGAGTTTGGGCTGTACAATTATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAGTACGAAGGAGCTGCAGCTATGTTCAAGGTTATGATGGATACCCCTCCTATACCAGAAACATTATCAGCCGATGGTAAAGATTTCCTAAGGCTTTGCTTTATGAGAAATCCAGCAGAGAGGCCAACTGCATTAATGTTACTAGATCATCGATTTCCTAAAAACGTACAAGAGGAAGATGCTTCATCTTCCACGCAGCTGTATAATGGAAAAACCTTGATGGATACGCATTGTCCCAGAGATGTGTTTGTTGACACTAAACCTGATCAGATTTTTATTTCTAGTTCACAGATTGCTAAAGGAAAATCAGCGACCGATAGTGGAATCTCAGTGCCCTACCCACTCTTCTCTTCAACTAGTACTTCCTAG 1890 0.4603 MRWLPTLHFSPSHHSHSSSSSSSLPEPRKSTRSIWFFGSAKKSTRSRKLRHVTDLEAVVGPPLALSRSSSTVDRSSLVPQPLPLPRDRFPKDAADTPAAVDVSLTAGFKMRSVFASQETRKNMAQVETRSTGTGLMTGQGQGQGQGQCQGDSTLWTSIPTRSAPTSPFGSPIISPKNAKTDDFIPYYYVSPKANQFWSAPEMPINDPSPPPAFFDISALRTSDNPPSPHHSPRGKSPTAPSPSCSSIPPRLSLDTSIARRETLTVHPLPLPPWAPLPSPPPTFSPPLAKTECHPMINQWQKGKLIGRGTFGSVYVATNRKTGALCAMKEAEIFSDDPKSAECIKQLEQEIKVLSHLKHPNIVQYYGSEIVEDRFYIYLEYIHPGSMNKYVREHCGAITECVVRSFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGHVADLSLKGSPYWMAPELMQAVVQKDNSSDLAFAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMMDTPPIPETLSADGKDFLRLCFMRNPAERPTALMLLDHRFPKNVQEEDASSSTQLYNGKTLMDTHCPRDVFVDTKPDQIFISSSQIAKGKSATDSGISVPYPLFSSTSTS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01434 629 ProSiteProfiles Protein kinase domain profile. 299 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01434 629 SMART serkin_6 299 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01434 629 ProSitePatterns Protein kinases ATP-binding region signature. 305 328 IPR017441 GO:0005524
Cca06g01434 629 Gene3D Transferase(Phosphotransferase) domain 1 296 607 - -
Cca06g01434 629 SUPERFAMILY Protein kinase-like (PK-like) 281 593 IPR011009 -
Cca06g01434 629 MobiDBLite consensus disorder prediction 10 29 - -
Cca06g01434 629 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 608 - -
Cca06g01434 629 Pfam Protein kinase domain 300 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01434 629 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 1 608 - -
Cca06g01434 629 MobiDBLite consensus disorder prediction 200 250 - -
Cca06g01434 629 MobiDBLite consensus disorder prediction 66 93 - -
Cca06g01434 629 MobiDBLite consensus disorder prediction 236 250 - -
Cca06g01434 629 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01434 Cca-Chr6 29223771 29233133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01434 1 588 MAP Kinase Kinase Kinase AT5G66850 53.211 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca06g01434 Pkinase 3.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01434 - - gmx:100793654 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01434 06 29223771 29233133 Cca11g01278 11 32914917 32920077 PCT