Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01433 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTCCTGAGGCGAAAGTGCACGCAAGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTTGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCCAAGCTCCTCAACGAGCTCAGCGCGGCGCAGCGAGACGACGCCGTAAAGTCCCTCGCGTACGAGGCGGAGGCGCGTCTCCGGGACCCCGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTCCAACACAAGCTCCGGCAGATCCAGGTGGAACTCAACAATGCCAAGAAGGAACTCGCCACCTATATTGGCCCACAAGCCTTTCAGCCCATGCCCGGCCCCATTCTCCAACACCACCCCAACAACCCTTTCCCCTCTCCCCTCTACGCCAACATGGCGGCGGGCGCTCCCCCCCCCCACGCCGGCCCGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCGGCGGCCGCTCCCGCCGCTCACGGAGGCCAGTTGATCATCCGCGACGCCCAGCCTCCGCCGCCGCAGCAGCAGTCGCAGATCTTGGAGGCCCAGCAGTTGGCTGCGGCTGTCGCCGCAAGAGAGCAGCAGGAGATGTTTAGAAGCTACGAGCACCAACAGCAGCAGGAGTTTCTACGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAGGTGTCCCAACCTGCTGGTTCTGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGACACTTCGACAACGCTTATCACATGCAACAACCACAACAAGGAGACCCTCATCCTCATTCTCATCATATTCCCTTTGAGGCTCAGCTTCTTCAACTCCCTCCGCAGCAAAAGCAAGGGCAGCAACAAACCCAGCACCAGCAGTCGCAGCTGCCCCTTCAGTCTGAGAACGACGAGTGTAGGAGTGTTGGTCCATCTTGTTGA 1008 0.5704 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNNAKKELATYIGPQAFQPMPGPILQHHPNNPFPSPLYANMAAGAPPPHAGPVXXXXXXXXXXXXXXXXXXXRAAAAPAAHGGQLIIRDAQPPPPQQQSQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASSAGGFSQVSQPAGSADQLSPSLALGHFDNAYHMQQPQQGDPHPHSHHIPFEAQLLQLPPQQKQGQQQTQHQQSQLPLQSENDECRSVGPSC 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01433 335 Coils Coil 153 153 - -
Cca06g01433 335 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 139 - -
Cca06g01433 335 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 181 309 - -
Cca06g01433 335 Coils Coil 173 173 - -
Cca06g01433 335 Coils Coil 87 107 - -
Cca06g01433 335 MobiDBLite consensus disorder prediction 300 335 - -
Cca06g01433 335 MobiDBLite consensus disorder prediction 243 335 - -
Cca06g01433 335 MobiDBLite consensus disorder prediction 120 141 - -
Cca06g01433 335 MobiDBLite consensus disorder prediction 180 200 - -
Cca06g01433 335 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Cca06g01433 335 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 139 - -
Cca06g01433 335 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 181 309 - -
Cca06g01433 335 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Cca06g01433 335 MobiDBLite consensus disorder prediction 244 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01433 Cca-Chr6 29206458 29207465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01433 3 276 AS2 family AT5G66870 45.763 1.12e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca06g01433 LOB 1.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01433 - - gmx:102664012 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01433 06 29206458 29207465 Cca11g01276 11 32897462 32898462 PCT
Cca11g01275 11 32855484 32856288 Cca06g01433 06 29206458 29207465 PCT