Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01428 ATGGCGGATCTGTTCAGCGGAGGCGCAGTGGGCGCAGTCATGGGCGAGTTGCTAAAAGGCGCCATCGCCACCATAAACAAGGGTCGCGAATTCCATCCCACTCTCGAGAGCAACATAGAAACCCTAAACTCTCTTGCTCCACTCGTGGAAGAGATGAAACGTTACAACGAGATGTTGGATCGGCCAATAGCAGAGATAGGCAGGTTGGAGAGTCGCATACGCGACGGTCAACAGTTGGTCAACAAGTGTTCAAAATTCAGCCTCTGGAGAGCGCTCTCTTTTCCGTACTACCAGGGGAAGCTTCGGAGCAAGGACGAGGCTCTGAAGAGGCACTTGTCGATACAAGCGACGGCGGAGAACAAGAGGGACTTGATGGAGGTGGTTTTCAGCGTCAGGAAGATTCTGGAGATTCTGCTGAACAAGGAGGGTATCGGGGACTATCCTGGTGGGTATGAGTTGAGGGGGCTGAGAGGGGCTCCGGAAGAGCCCGAGTGTATGGGAATGGACGAGCCTTTGAGCAAGCTGAGGAGTGACCTGCTCAAGGATGGTGTGTCCGTGATGGTGTTGACTGGTTTGGGTGGATCCGGGAAAAGCACTCTGGCTAAGAAGATATGTTGGGACGCTCAGGTCAGAGACAAGTTTGGGGGAAACATCTTCTTTGTCACCGTCTCAAGAACGCCCAACTTGAAGACCATTGTAGAGACACTGATTGAATACTGTGGATGTCGGGTGCCTGACTTTCAAAGCGATGAAGATGCAATTAACCGATTGGGAATTCTGCTGAGGCGTGTGGGGAAAAATCCAATATTGTTGGTCTTGGATGATGTTTGGCCTAGCTCAGAAGCCCTTATTGAGAAGTTCAAAATCCAAATACCTGATTATAAGATTTTGGTGACTTCAAGGGTTGCATTTCCAAGATTTGGGACCCCATGCCAGTTGGATAGACTTGATCATGATCATGCAGTAGCCCTTTTCTGTCACTTTGCACAGCCGAATGACGGGGGATCATACAAGCCTGATCAAAATCTTGTAGACGAGATTGTGAGAGGTTGTAGGGGTTCACCTTTGGCGCTTAAGGTCACAGCTGGATCACTCTGTGGGCAGCCTTTCGAGGTGTGGCAAAACATGAAGGAGCGTCTACAAAGTCAACCCATTCTGGCACCTTTGCTTTGTCGTCTTCAACAAAGTTTAGATATATTGGAGAAAAAGTTTTCCATCGAAGAAAAGGTGTGCTTCATGGATCTAGGGCTATTTCCTGAAGACCAAAGGATCCCTGTTGCTGTCCTCATTGATATGTGGACAGAACTGTATAACCTTGATGAAGATGGCAAGAATGCAATGACCATCGTCCATGATTTAACCACCAGGAATTTGATTAATGTCATAGTTAGAAGGAAAGTTGCAAATGATGCAGACATGTATTACAATAACCACTTCGTTATGCTGCATGATCTCCTTAGAGAGCTAGCAATCCATCAAAGCAAAGAGGAACCATTTGAACAGAGAGAAAGACTGATTATTGACTTAAATGGAGATAATCGTCCTGAATGGTGGGTAGGAAAGAATCAGCAAGGAAGCATTGGCCGTATGTTCTCATTCTTCCTCGGAATGTTGGTAGGACAGAAACAGCTCAGAGTCGCTGCCCGCATATTGTCGATTTCAACTGATGAAACGTTTACTTCAGATTGGTGTGACATGCAACCTGACGAAGCTGAGGTTCTGATTTTAAATCTTCACTCTAACCGGTACTCATTACCTGATTTCACAGAGAAGATGAGTAAACTTAAAGCTCTGATAGTCACAAACTATGGTTTCCATCGTTCTGAAATAAATAAGTTTGAGCTACTTGGCTCTTTATCTAACTTGAAAAGAATCAGATTGGAAAAGGTTTCAGTCCCTTCCCTGTGCATGCTGAAGAATCTGCGAAAATTGTCCCTTCGTATGTGCAACACAAGGCAGGCTTTTGAAAGCGGTTCTATCCAAATCTCAGATGCAATGCCAAATCTAGTGGAGATAAGCATGGACTATTGCAATGATCTGGTTAAATTGCCTGATGGGCTGTGTAGCATTACCCCATTAAAGAAGCTTAGTATCACTAACTGTCACAAGCTTTCTGCACTGCCACAAGATATTGCAAAGCTGGAGAATTTGGAAGTGTTAAGGTTATGCTCCTGCTCTGCTTTGATAGAGATGCCAGATTCTGTTGAAGGGCTTAACAAGCTAAGCTGTCTTGACATCTCAGACTGTGTTAGTCTTACCAAATTACCAGCTGACATTGGAGTTACCAAGATCAATTCTAACATTTCAGCTTCGCTAGCTCATGAGGAGCACTCGCCATTTTCTTCTATTCCAACATGCATAGATTCCTTTTTGTGA 2376 0.4529 MADLFSGGAVGAVMGELLKGAIATINKGREFHPTLESNIETLNSLAPLVEEMKRYNEMLDRPIAEIGRLESRIRDGQQLVNKCSKFSLWRALSFPYYQGKLRSKDEALKRHLSIQATAENKRDLMEVVFSVRKILEILLNKEGIGDYPGGYELRGLRGAPEEPECMGMDEPLSKLRSDLLKDGVSVMVLTGLGGSGKSTLAKKICWDAQVRDKFGGNIFFVTVSRTPNLKTIVETLIEYCGCRVPDFQSDEDAINRLGILLRRVGKNPILLVLDDVWPSSEALIEKFKIQIPDYKILVTSRVAFPRFGTPCQLDRLDHDHAVALFCHFAQPNDGGSYKPDQNLVDEIVRGCRGSPLALKVTAGSLCGQPFEVWQNMKERLQSQPILAPLLCRLQQSLDILEKKFSIEEKVCFMDLGLFPEDQRIPVAVLIDMWTELYNLDEDGKNAMTIVHDLTTRNLINVIVRRKVANDADMYYNNHFVMLHDLLRELAIHQSKEEPFEQRERLIIDLNGDNRPEWWVGKNQQGSIGRMFSFFLGMLVGQKQLRVAARILSISTDETFTSDWCDMQPDEAEVLILNLHSNRYSLPDFTEKMSKLKALIVTNYGFHRSEINKFELLGSLSNLKRIRLEKVSVPSLCMLKNLRKLSLRMCNTRQAFESGSIQISDAMPNLVEISMDYCNDLVKLPDGLCSITPLKKLSITNCHKLSALPQDIAKLENLEVLRLCSCSALIEMPDSVEGLNKLSCLDISDCVSLTKLPADIGVTKINSNISASLAHEEHSPFSSIPTCIDSFL 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01428 791 ProSiteProfiles RPW8 domain profile. 1 150 IPR008808 -
Cca06g01428 791 Gene3D - 396 493 IPR036388 -
Cca06g01428 791 Gene3D - 156 304 IPR027417 -
Cca06g01428 791 PRINTS Disease resistance protein signature 186 201 - -
Cca06g01428 791 PRINTS Disease resistance protein signature 263 277 - -
Cca06g01428 791 PRINTS Disease resistance protein signature 712 728 - -
Cca06g01428 791 PRINTS Disease resistance protein signature 351 365 - -
Cca06g01428 791 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 1 761 IPR039203 GO:0050832
Cca06g01428 791 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 2 132 IPR008808 -
Cca06g01428 791 Gene3D - 315 395 IPR042197 -
Cca06g01428 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 415 IPR027417 -
Cca06g01428 791 SUPERFAMILY L domain-like 483 758 - -
Cca06g01428 791 Gene3D Ribonuclease Inhibitor 552 775 IPR032675 -
Cca06g01428 791 Pfam NB-ARC domain 171 398 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01428 Cca-Chr6 29141607 29147469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01428 575 764 Receptor kinase-like Gene Family AT1G75640 27.000 8.50e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01428 - - gmx:100792590 1257.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01428 06 29141607 29147469 Cca11g01271 11 32737693 32743642 PCT