Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01412 ATGTTTCTTTGCCCGCAATCAAATCTGGCTGCAATAGTGTTGACAATCTTGGTAGCGATCACCACAAAAGCACAAAACCTCACCTGCAATCGCCAATGCGGGGATCAGACTCTTCAATTTCCCTTTGGATTCTCCGAAGGTTGTGAAATCCGATTGAAGTGTTCAGAAAAGCGAGTCCAAGTTGAGGAATTTGTGGTCCGAAACGTAACGAACAGCAACATATTGGTGGATCTCCCTGCAAAATGCAACCGTAGCATGCAGTCCATTGGGCCACTTTTCGGTGAGAATTTTGCCCCTACGTTGAACAATAGCTTTCTGGTGCAAGATTGCAGAGAGGTGCTGGGTGGGTGCGTTATTCCTGCTTCAAGTTTTGTGGGGAGGCATTTTGATGTGGAGAGCTGCGACGAGAGGAGTAGTAACATAAGCTGCTTCAATAAGGTGGAGCAAAAGGATGAAGTGGATGTTGTATCGTACGATGATTTGAACAATTCGAGGTGTAAGTACTTGTTCTCTGCGCTTTCTTTTGCACAGAGCCAGGAGATTCAGCTTCAGTTTCAGGTGGTGGAGTTGGGGTGGTGGCTCAGAGGGGACTGTCGGTGTTCTCAAAACGCTACCTGTACCACGCTGCGTCTCCACGGTGGGGACGCAGGGTTCCGCTGCCACTGTCTCCAAGGTTTCTGGGGTGACGGCTTCGTCCACGGCACCGGTTGCCGGAAAGCTTCATCAAGTTGCAGTGCTTCAACAATAACGTCCGGGGGATGTGGGAAAGCAACCAAAATCGGTGTTGTTGTTGGAGTGATCATAGCTGGAACTTTGGTGGTGGCTGGTGTGTTTCTTCTATGGTATTGTGCCTGGCGCCGTTCTACTTGGTTGGGAAAACACACCATAGTAAAACGCCAATTACGTGAAGCTGCAGGCGACTCTAGTGTACCTTTCTATCCTTACAAAGAAATAGAGAAGGCCACAAGTTCTTTCTCTGACAAACACAGGCTGGGAACTGGGGCTTTTGGCACAGTTTATGCTGGAAAACTGCACAATGATGAGTGGGTTGCTATAAAGAAGTTAAGGCAAAGAGACACCAACAGCGTTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAATTTGGTTCGCCTCTTAGCATTTGCAAAAAGAGAGGGGATTGGCATGATGGAAACATCTCATATCTCAACTGCCCCACAAGGGACTCCAGGTTATGTGGATCCTCAATACCATCAGAACTTTCACCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCATGAAAGTGGTTGATTTTGCTCGACCTCGGAGTGAGGTAAATTTAGCTGCTCTTGCTGTTGATAGGATTAGGAGGGGTACCATAGATGAGATCATAGACCCCTTCCTTGAACCACATAGAGATGCTTGGACACTATACTCTATTCATAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGATGGAAGTGGCAGAGGAGCTAGAGCACATTAGACAAAGTGGATGGGCAGCTATGGAGGAAACTGTCACGGCTTCATCGATTGGTTCCACTAGTTCATCACCTCGCCATGGAAGTGAGAGGTCACTGAGTGGCATTAAAAAAGCTGGGCATGGGAGTGAGAGATTGATTGTTTCACAGAAGACAGAATGTCTTTTGCATTCTGTGGAGGTGAAGGATAGCTCCCCTGTATCAGTGCATGATCGTTGGTCAAGTGGACCTAGCTCACCTTCATCAAACAGCTTGTTGGGAAATGTCATCCCGTGA 1833 0.4703 MFLCPQSNLAAIVLTILVAITTKAQNLTCNRQCGDQTLQFPFGFSEGCEIRLKCSEKRVQVEEFVVRNVTNSNILVDLPAKCNRSMQSIGPLFGENFAPTLNNSFLVQDCREVLGGCVIPASSFVGRHFDVESCDERSSNISCFNKVEQKDEVDVVSYDDLNNSRCKYLFSALSFAQSQEIQLQFQVVELGWWLRGDCRCSQNATCTTLRLHGGDAGFRCHCLQGFWGDGFVHGTGCRKASSSCSASTITSGGCGKATKIGVVVGVIIAGTLVVAGVFLLWYCAWRRSTWLGKHTIVKRQLREAAGDSSVPFYPYKEIEKATSSFSDKHRLGTGAFGTVYAGKLHNDEWVAIKKLRQRDTNSVDQVMNEIKLLSSVSHPNLVRLLAFAKREGIGMMETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARPRSEVNLAALAVDRIRRGTIDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMMEVAEELEHIRQSGWAAMEETVTASSIGSTSSSPRHGSERSLSGIKKAGHGSERLIVSQKTECLLHSVEVKDSSPVSVHDRWSSGPSSPSSNSLLGNVIP 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01412 610 Pfam Protein tyrosine and serine/threonine kinase 412 517 IPR001245 GO:0004672|GO:0006468
Cca06g01412 610 Gene3D Transferase(Phosphotransferase) domain 1 393 549 - -
Cca06g01412 610 SUPERFAMILY Protein kinase-like (PK-like) 310 529 IPR011009 -
Cca06g01412 610 Gene3D Phosphorylase Kinase; domain 1 297 392 - -
Cca06g01412 610 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Cca06g01412 610 ProSiteProfiles Protein kinase domain profile. 325 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01412 610 MobiDBLite consensus disorder prediction 531 549 - -
Cca06g01412 610 Gene3D Laminin 198 232 - -
Cca06g01412 610 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 19 386 - -
Cca06g01412 610 MobiDBLite consensus disorder prediction 531 555 - -
Cca06g01412 610 Pfam Protein kinase domain 326 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01412 610 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 397 560 IPR045274 GO:0007166
Cca06g01412 610 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 386 IPR045274 GO:0007166
Cca06g01412 610 MobiDBLite consensus disorder prediction 587 610 - -
Cca06g01412 610 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 397 560 - -
Cca06g01412 610 MobiDBLite consensus disorder prediction 585 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01412 Cca-Chr6 29002011 29006636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01412 29 608 Receptor kinase-like Gene Family AT2G23450 41.431 3.47e-143 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca06g01412 PK_Tyr_Ser-Thr 3.4e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01412 - - gmx:100779130 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01412 06 29002011 29006636 Cca11g01245 11 31853653 31858189 PCT