Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01401 ATGGAAGTGCTTCCTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCCCTCAACAGAGTTCAGGAACAGCTTTTGTATATCAGGAAGAACCTAATTTCCCTGAAAATAGTGAACAAGTCAAATTGGCAGCTTCTCAACTGAATGAATCATCACATAAGATGCCCTTGCATCAGATAGAAAGGGAAGGTGATTTATCAACTAATTCAGATTGCCAATACATTGGAGCTTCATCTTGTGACTGTCAAGTGGATGACCATAATGAATATTGTGGTTTCCATGATTTTGAAGAAGACATGATAAATGAAGCTTGCTTGACATCTGATAACTCTATCGCTATTGTGGATACAATTGAGAGTGAATCACCAAACAACAGTAGGGATGGAGATTGGTCTTGTGCCGAACCCAAGTGGCTAGAGGGGGATGGATCTATAGCACTATGGGTCAAGTGGAGAGGGAAGGGGCAGGCCGGTATCCGGTGTGCAAGGGCTGACTGGCCATTATCAACTTTGAAAGCAAAACCAACTCATGGTCGAAAGAAATATTTTGTTATATTTTTTCCAAACACAAGGATTTATTCTTGGGCAGACATGCTACTTGTTAGATCAATTGATGAGTTTCCCCATCCTATTGCATACAAGACTCATCAGGTGGGATTGAAACTGGTAAAAGACTTAACTGTTGCACGGCGGTTTATAATGCAAAAGCTAGTTGTTGGCATGCTGAACATGGTGGATCAGTTTCATTTCAATGCTTTGACAGAAACTGCACGTGATGTGAAGGTCTGGAAGGAATTTGCCATGGAGGCTTCTCATTATAATGGTTATTCTGATTTTGGAAGAATGCTTCTAAAGCTGCATAATAGCATACTGCAGCACCATATAAATGCTGACTGGTTACAGCATTCTTATCCGTCTTGGGTTGAAAGATGTCAGAGTGCAAATAGCGCTGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGGTGTCAATACTCTCTGGGACGCACCAGTGCAACCAACATTAGGTTCCGAATGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTCAACACCACCTTCCTTATTGATCAGCAAAGACATCCAGCAACAAAGTTCTGATGATTTGTACCAAGCAAACCTTCAAGTTTGTAGAAAAAGGGCCAAACTTGAAGTTCGTCGTGCAGATACACATTCTTCACAAGTGGAAATCAAGGCTCAAACTATTGCTCTTGACACCGACCCTGACTTTTTTAAGAATCAGGAAACTTTGAGCACATTAGCAACTGAGCCTTGCAAACAGGAAGGTGTTAGGGAGGTGTCTATGGCAACTGATTCACCTGGTAATTTGGAAAATAAATGGAATGAATTTGTAGTGGAGGCTGCTGATTCTGATTTCTTACATGCCAAAGAGATTGAATCAACACCTACAAATGGAATGAATGTTGCAAAATCTGTAGAACCTGGTAGTAAGAATCGACAATGCATAGCTTATATTGAAGCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGACGGTGATGTATACTGTTGTGTACATCTATCCTCCCGATTTTTGGGCAGCTCAGCAAAATCTGAAAAGCCTGTTCCAGTTGATACCCCTATGTGTGAAGGTACAACTGTTCTGGGTACTAGATGTAAGCATCGTGCCCTACCTGGCTCTTTATTCTGTAAGAAACACCGGCCACATGCTGAATCAGAACATATCTCTAATTTACACCAGAATACATTAAAGAGGAAACATGAAGAAAATTATACCGGTTCAGAGGACACATTCTGCAAAGATTTGGTATTGGTAAATGTTGAAAGTCCACTGCAAGTGGATCCAGTGTCATCCATTGGTGGTGATTCCTTGCATGGAGAAAGCAACTTTAATGAGAAGCCTATGCATTCTGAAAATGATCGTAATGCAATGGAGTCACTGCACTGTATAGGCTCTCCTCCCTATGATAACAAGAATCCTTGTAGGGAAGGCCCCAAACGGTATTGCTTGTACTGTGAAAGACACCTTCCAAGCTGGCTTAAACGTGCAAGAAATGGGAAGAGTAGAATAGTATCAAAGGAAGTGTTCACAGAACTTTTGAGGGACTGCAGCTCATGGGAGCAAAAGGTATATTTGCATAAAGCATGTGAACTTTTTTACAGGCTATTCAAAAGCATTTTATCATTAAGAAACCCTGTTCCTAAGAATGTCCAGTTCCAGTGGGCTTTGACTGAAGCCTCTAAAGATTCTAGTGTAGGAGAGTTTTTTACAAAATTAGTTCATAGTGAAAAATCGAGGATCAAATTGATATGGGGATTCAATGATGACATGGATATATCCTCTTTCATGGAAGAACCACCTCTCTTGCCATCCACAATTAATGATAACTATGATAAGGAAAATTCCATCAAGTGTAAGATATGCTCCGCAGAATTTCCAGATGACCAAGCACTTGGTAACCACTGGATGGACAGTCATAAAAAGGAAGCACAATGGCTGTTTAGGGGCTATGCCTGTGCTATTTGCCTGGATTCATTTACTAACAAGAAAATGTTGGAAACCCATGTTCAGGAGAGACACCATGTGCAATTTGTTGAACAATGCATGCTTCTTCAATGCATTCCTTGTGGGAGTCATTTTGGAAATACTGAGCAATTATGGCAGCATGTTTTATCAGTTCATCCAGTTGATTTTAAACCATCAAAAGCTCCTGAGCAAAAAACTTTCTCTACTGGCGAAGATTCTCCAGTAAAACATGATCAGGGAAATTCAGCCACGTTGGAGAATAATTCTGAGAATACTGGTGGTTTACGAAAATTTATTTGCAGGTTTTGTGGGTTGAAATTTGACTTACTACCTGACCTGGGTCGACATCACCAAGCTGCTCATATGGGTCCTAATTTGGCCAGCAGTCGCCCTGTAAAGAGGGGAGTTCGCTATTATCCATATAGATTAAAATCTGGCAGACTAAGCCGCCCTAGATTTAAAAAAAGTTTGACAGCAGCATCATACAAGCTTAGAAATAAGGCTAATGCTAATTTAAAGCGATCCATTCAGGCAACAAACTCACTTGGAACTGGAGGAATAACCATACAACCTGATGTTACTGAAACAACAAACATAGGTAGATTGGAAGAAAATCAATGCTCAGCTGTTTCAAAGATTTTGTTTTCAGAGATTCAGAAGACGAAACAGAGGCCTAACAATCTTGATATTTTATCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTGTAGCCTCACTGGAGGAGAAATATGGAATTCTGCCTGAAAAGCTCTATTTGAAGGCAGCAAAACTTTGCAGTGAGCATAGTATTTTGGTAAATTGGCACCATGAGGGGTTTATTTGTCCTAGAGGTTGTAAGGTGTCAAAGGATCAAGCTCTGCTATCTCCTTTAGCATCTCTTCCTAATAGTTCTGTGATGCCCAAGTCTGTGAATTTATCTGATCTTGCAAGTGATGAGTGGGAGGTGGATGAATTTCACTGCATCATCAATTCTCGTACTTTAAAATTAGGTTCACTGCAAAAAGATGTTATCTTGTGTGATGACATTAGCTTTGGAAAGGAATCAGTTCCAGTGACTTGTGTAGTAGATCAAGAACTTGTGCATTCTCTTCATATGAATGGGTGTAATGGACAAAATACAAACTCTTCTATGCCTTGGGAGACCTTTACCTATGTTACGAAGTCAATGCTTGATCAATCCCTTAGTCTGGATTCGGAGAGTCTGCAATTGGGATGTGCCTGCTCTTACTCTACCTGTTGTCCTGAAACTTGTGATCATGTATACCTTTTTGGCAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGAAGGTTCCCATATGATGAGAATGGTCGAATAATCTTGGAGGAAGGCTATCTTGTCTATGAGTGTAACCATATGTGCAGATGCAATAAATCCTGTCGAAACAGAGTATTGCAGAATGGAGTCCGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCCGGTGAAGCTATTCTACGTGGCACATTTGTGTGTGAATACATTGGAGAAGTTTTAGATATGCAGGAGGCACGTGATAGGCACAAGAGATATGGCACAGAGCATTGCAGTTATTTCTACAACATCGATGCTCGTGTTAATGATATGAGCAGATTGATTGAAGGACAGGCTCAGTATGTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATTAATCATAGCTGCTCACCAAATCTCGCCAATCACCAAGTTCTCGTGGACAGCATGGATTGTGAACGTGCACATATTGGTCTTTATGCAAGTCGGGATATTGCTTTGGGTGAAGAGCTGACATATGACTTCCACTACGAGCTTGTGCCTGGAGAAGGATCTCCCTGTCTTTGCGAATCCTTGAAGTGTAGGGGACGCCTTTATTAG 4488 0.4073 MEVLPCSGVQYAGESDCPQQSSGTAFVYQEEPNFPENSEQVKLAASQLNESSHKMPLHQIEREGDLSTNSDCQYIGASSCDCQVDDHNEYCGFHDFEEDMINEACLTSDNSIAIVDTIESESPNNSRDGDWSCAEPKWLEGDGSIALWVKWRGKGQAGIRCARADWPLSTLKAKPTHGRKKYFVIFFPNTRIYSWADMLLVRSIDEFPHPIAYKTHQVGLKLVKDLTVARRFIMQKLVVGMLNMVDQFHFNALTETARDVKVWKEFAMEASHYNGYSDFGRMLLKLHNSILQHHINADWLQHSYPSWVERCQSANSAESVELLKEELFDSILWNGVNTLWDAPVQPTLGSEWKTWKHDVMKWFSTPPSLLISKDIQQQSSDDLYQANLQVCRKRAKLEVRRADTHSSQVEIKAQTIALDTDPDFFKNQETLSTLATEPCKQEGVREVSMATDSPGNLENKWNEFVVEAADSDFLHAKEIESTPTNGMNVAKSVEPGSKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSAKSEKPVPVDTPMCEGTTVLGTRCKHRALPGSLFCKKHRPHAESEHISNLHQNTLKRKHEENYTGSEDTFCKDLVLVNVESPLQVDPVSSIGGDSLHGESNFNEKPMHSENDRNAMESLHCIGSPPYDNKNPCREGPKRYCLYCERHLPSWLKRARNGKSRIVSKEVFTELLRDCSSWEQKVYLHKACELFYRLFKSILSLRNPVPKNVQFQWALTEASKDSSVGEFFTKLVHSEKSRIKLIWGFNDDMDISSFMEEPPLLPSTINDNYDKENSIKCKICSAEFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKMLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLSVHPVDFKPSKAPEQKTFSTGEDSPVKHDQGNSATLENNSENTGGLRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPVKRGVRYYPYRLKSGRLSRPRFKKSLTAASYKLRNKANANLKRSIQATNSLGTGGITIQPDVTETTNIGRLEENQCSAVSKILFSEIQKTKQRPNNLDILSIARSACCKVSLVASLEEKYGILPEKLYLKAAKLCSEHSILVNWHHEGFICPRGCKVSKDQALLSPLASLPNSSVMPKSVNLSDLASDEWEVDEFHCIINSRTLKLGSLQKDVILCDDISFGKESVPVTCVVDQELVHSLHMNGCNGQNTNSSMPWETFTYVTKSMLDQSLSLDSESLQLGCACSYSTCCPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKSCRNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDMQEARDRHKRYGTEHCSYFYNIDARVNDMSRLIEGQAQYVIDATKFGNVSRFINHSCSPNLANHQVLVDSMDCERAHIGLYASRDIALGEELTYDFHYELVPGEGSPCLCESLKCRGRLY 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01401 1495 Pfam Zinc finger C2H2-type, 3 repeats 847 972 IPR040689 -
Cca06g01401 1495 Pfam Pre-SET motif 1200 1332 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca06g01401 1495 SMART c2h2final6 879 902 IPR013087 -
Cca06g01401 1495 SMART c2h2final6 948 971 IPR013087 -
Cca06g01401 1495 SMART c2h2final6 811 834 IPR013087 -
Cca06g01401 1495 SMART c2h2final6 845 868 IPR013087 -
Cca06g01401 1495 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1495 - -
Cca06g01401 1495 ProSiteProfiles SET domain profile. 1340 1472 IPR001214 GO:0005515
Cca06g01401 1495 SUPERFAMILY SET domain 1190 1485 IPR046341 -
Cca06g01401 1495 Pfam SET domain 1351 1470 IPR001214 GO:0005515
Cca06g01401 1495 Gene3D Classic Zinc Finger 798 871 - -
Cca06g01401 1495 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1495 - -
Cca06g01401 1495 MobiDBLite consensus disorder prediction 912 939 - -
Cca06g01401 1495 Gene3D SET domain 1179 1476 IPR046341 -
Cca06g01401 1495 ProSiteProfiles Pre-SET domain profile. 1261 1337 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca06g01401 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 813 834 IPR013087 -
Cca06g01401 1495 SMART preset_2 1197 1324 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca06g01401 1495 ProSiteProfiles Zinc finger C2H2 type domain profile. 845 868 IPR013087 -
Cca06g01401 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 881 902 IPR013087 -
Cca06g01401 1495 ProSiteProfiles Post-SET domain profile. 1479 1495 IPR003616 -
Cca06g01401 1495 SMART set_7 1340 1478 IPR001214 GO:0005515
Cca06g01401 1495 MobiDBLite consensus disorder prediction 910 939 - -
Cca06g01401 1495 ProSiteProfiles Zinc finger C2H2 type domain profile. 948 976 IPR013087 -
Cca06g01401 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 950 971 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01401 Cca-Chr6 28905944 28920973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01401 128 1494 C2H2 Transcription Factor Family AT2G23740 51.578 0.0 1403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g01401 Pre-SET 3.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01401 - - gmx:100786757 2723.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01401 06 28905944 28920973 Cca06g01401 06 28905944 28920973 ECH