Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01399 ATGTCACAGGAGTATCAACAAGGAATCTTCAGCTTCTCGAATGGGTTGGAGAGAGGAAGGGTGAGTCCGCAGCAGCAGATCCGGAGGGAGAAGGTGAGGTTCGAGGCAGCGCCATTGGTAGGGATAGAGGAAGAGGAAGCGGTGTACGAGAGCGGCGGGATGTTGTCGGAGATGTTCAATTTCCCTCCGGCGGCGGAGCTGGTGGAGCAGCAGCAGCAGGCGGTGACGGGGAGGCAAGGCGGGGAGTGGTACGGAAACAGACAAAACGGTGGGAATAATGGGCGAGATGGTTTGGTTCACAACCAGATTCCAAGCATTAATGCTGACTCAGCAGCAGCCATGCAGCTTTTTCTGATGAACCCTCAAACGAGGTCCCCTTCGCCTCCTCCTTCCTCCACACTTCACATGCTGCTTCCCAATCCTTCTTCCAATTCCCTCCAAGGCCCTTTTGGTCAGTTCACATGGGTTCCTCAGAACGTCGTTGAAGGACAAGGTCTTTCCTTATCCTTGTCTTCTTCCCTCGAAGCAGCCAAAGCCGAGGAATTCAGAATTGGGGATACTGGTTTTCTTTATTACAATCATCAGCAACCTGCTGCTGCCGGAGGACcttcttcttcttcttccactcttcAGTATCCGTACAAGAATAATACTCATCAGACATTGCATTTGCAAGGGGCGATGGGACACGACAGCAACCACCAGGGACATGTTGGCTTTGCCTCTTCCTCGTTAGGTGTAGTTAATGTTATGAGAAATTCCAAATATGTCAAGGCTGCTCAAGATTTACTTGAGGAGTTTTGCAGTGTTGGGAGGGGTCACTTTAAGAAGACCAAGTTCAATACACAAAATTCAAACCCTAATTCAAATCCTGCTGCTGGCGGTGCTGCTTCTTCGCCTTCCTCGAAAGATGctcctcctcctcctcctTTGTCAGCGCCTGATAGGATTGAGCATCAGAGAAGAAAGGTCAAACTTCTATCAATGCTTGACGAGGTGGATCGGAGATACAACCACTACTGCGAGCAAATGCAAATGGTAGTGAACTCATTTGACCTGATGATGGGTTTTGGCGCGGCAGTTCCGTACACAGCACTGGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGACGCAATAACAGCGCAGCTGAAACACAGTTGTGAGCTACTAGGAGAGAAAGATGGGGCAGGGACCTCAGGTTTGACCAAGGGAGAGACCCCAAGGCTTAAGATGTTAGAACAAAGCCTAAGACAGCAAAGAGCCTTCCACCAAATGGGGATGATGGAACAAGAAGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGATCTGTCAATATTTTAAGAGCCTGGCTTTTCGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTAGCACGACAGACTGGGCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAGGAAGCAGAGTGTGCAGAAGAGAGAGAAAAGAACAGCAATAGTAGTGGGAACCAAGCACAAACTCCAAGCacatcaacagcaacagcgccaccaccaccacccacaataacaacaaaaccaacaGGCAAAAGATCCGATATCAATGCCCCCGAAAGCGACCCTTCACTCGTTGTAATCAATAGACAAGGCTTCTCGGAAAACCAAGCGAAACAGTccacctccgccaccacctccaccactgccatggcctccgtcagcgcccccgccTCTGAGGTGGCGCCACCCGTGTCTCAGTGTTTCGACTCAGACCTGCCCCCACACAGGTTAATGGCCACAGATGACACGTGTCGCTTTGTCACACCAGATTTTGGGACCGCATCTGCAAGTGCTGACATTGGATCCACTCTCATTAGGTTTGGGACCACACCGGGTGACGTGTCACTTACCCTAGGGCTTCGCCACGCCGGGAACATGCCCGAGAAAACTCCTTTCTCTGTTAGAGACTTCGGAGGCATTTAA 2040 0.4642 MSQEYQQGIFSFSNGLERGRVSPQQQIRREKVRFEAAPLVGIEEEEAVYESGGMLSEMFNFPPAAELVEQQQQAVTGRQGGEWYGNRQNGGNNGRDGLVHNQIPSINADSAAAMQLFLMNPQTRSPSPPPSSTLHMLLPNPSSNSLQGPFGQFTWVPQNVVEGQGLSLSLSSSLEAAKAEEFRIGDTGFLYYNHQQPAAAGGPSSSSSTLQYPYKNNTHQTLHLQGAMGHDSNHQGHVGFASSSLGVVNVMRNSKYVKAAQDLLEEFCSVGRGHFKKTKFNTQNSNPNSNPAAGGAASSPSSKDAPPPPPLSAPDRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGTSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAECAEEREKNSNSSGNQAQTPSTSTATAPPPPPTITTKPTGKRSDINAPESDPSLVVINRQGFSENQAKQSTSATTSTTAMASVSAPASEVAPPVSQCFDSDLPPHRLMATDDTCRFVTPDFGTASASADIGSTLIRFGTTPGDVSLTLGLRHAGNMPEKTPFSVRDFGGI 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01399 679 MobiDBLite consensus disorder prediction 278 297 - -
Cca06g01399 679 Gene3D - 439 501 - -
Cca06g01399 679 ProSiteProfiles 'Homeobox' domain profile. 433 496 IPR001356 GO:0003677
Cca06g01399 679 MobiDBLite consensus disorder prediction 509 559 - -
Cca06g01399 679 SMART prehox3 245 384 IPR006563 -
Cca06g01399 679 MobiDBLite consensus disorder prediction 518 532 - -
Cca06g01399 679 SUPERFAMILY Homeodomain-like 437 503 IPR009057 -
Cca06g01399 679 MobiDBLite consensus disorder prediction 571 606 - -
Cca06g01399 679 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 43 668 - -
Cca06g01399 679 CDD homeodomain 436 497 IPR001356 GO:0003677
Cca06g01399 679 Pfam Homeobox KN domain 453 492 IPR008422 GO:0003677|GO:0006355
Cca06g01399 679 MobiDBLite consensus disorder prediction 571 593 - -
Cca06g01399 679 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 43 668 - -
Cca06g01399 679 Pfam Associated with HOX 250 383 IPR006563 -
Cca06g01399 679 SMART HOX_1 436 500 IPR001356 GO:0003677
Cca06g01399 679 MobiDBLite consensus disorder prediction 278 320 - -
Cca06g01399 679 Coils Coil 499 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01399 Cca-Chr6 28870513 28878436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01399 1 483 Homeobox Transcription Factor Family AT4G36870 52.028 8.39e-145 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca06g01399 POX 4.9e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01399 - - ccaj:109799862 1183.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01399 06 28870513 28878436 Cca06g01399 06 28870513 28878436 ECH
Cca06g01399 06 28870513 28878436 Cca11g01228 11 31417688 31425175 PCT