Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01396 ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCTGATCATAAAGTTTCACGTGGACAATACCAAGGCAGATATGGAGAGGACAGAATTTGGGATAATCATCGTAGTTCAATGGATGATTTGACGGACATTGAGAAAGAAGACATTGATCGTGCAATTGCAATCTCTCTGTCAGAGGAGGATCAGGAAAGGAAACAAGTTCTTGAGGATGATTCTCAATCTGAAGATGAGCAACTATGTATAATTGATGATGAGGAAGATGAGCATATTGGTAGAGTTCATCTAGATGAGGATGAACAGCTTGCTAAAATTCAACAAGAAGAAGATGAACGTCTTGCTAAAATTCAACAAGAAGAAGATGAACGTCTTGCTAAAATTCAACAAGAAGAAGAAGAGCATCTTGCTAAAATTCAACGAGATGAGGATCAACGTCTTGCTAAAATTCAACAAGATGAGGATCAACGTCTTGCTAAAATTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGTTTGGAAATTGGTTCTCTGCCTCAATATGGCAATGATTCTTCACTTTTATCTATTCCTCACCTCTTTCCCTCTGGATACAGAATCTGTGCTGGATGCAAGACTGAGATTGGGCAAGGAAGATTTTTAAGTTGCATAGGAGCTGTCTGGCATCCAGAATGCTTCTGCTGCCATGCGTGCCATCTTCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGATAAACATCACCCAAGATGTGATGTTTGCAAGAACTATATCCCAACTAATTCAGCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATATTGCCCTTCTCATGAGCTTGATGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAGAGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCGTCAGTTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAGTTCCTATGCTCTTGGTTGAGAGACAAGCTTTGAATGAAGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTCACCACTATTTTAAGGAGGCCAAGGATTGGGGCAGGCTACCGAGCAGTAGACATGATTACTGAACCTTATAGGCTGACCCGTCGTTGTGAAGTGACAGCTATTCTTGTTTTGTATGGCCTCCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCCAACCTCAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGCTTTATACTGGATATGGGAATGACGGTGcatcgtcatcgtcgtcttcatcgttatcatcaccttcctcctcttctacatcaacaaAGAAGGGTAAACGGTCCGACTTTGAGAAGAAACTAGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATTGGGTAACCAAGCAATGCTCAAGTATGGGCTCAAAAGAACCCTTGACCATATCCATATGACAGGAAGTTTTCCAATTTGA 1716 0.3998 MGWFTKLLKGSDHKVSRGQYQGRYGEDRIWDNHRSSMDDLTDIEKEDIDRAIAISLSEEDQERKQVLEDDSQSEDEQLCIIDDEEDEHIGRVHLDEDEQLAKIQQEEDERLAKIQQEEDERLAKIQQEEEEHLAKIQRDEDQRLAKIQQDEDQRLAKIQLEEDEQLARAIQESLEIGSLPQYGNDSSLLSIPHLFPSGYRICAGCKTEIGQGRFLSCIGAVWHPECFCCHACHLPITDYEFSMSSNRPYHKSCYRDKHHPRCDVCKNYIPTNSAGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSVMDTHECQPLYLEIQEFYEGLNMKLEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRAVDMITEPYRLTRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYTGYGNDGASSSSSSSLSSPSSSSTSTKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAMLKYGLKRTLDHIHMTGSFPI 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01396 571 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 227 - -
Cca06g01396 571 MobiDBLite consensus disorder prediction 496 513 - -
Cca06g01396 571 ProSitePatterns LIM zinc-binding domain signature. 202 236 IPR001781 -
Cca06g01396 571 SMART lim_4 201 253 IPR001781 -
Cca06g01396 571 CDD LIM_DA1 202 254 - -
Cca06g01396 571 PANTHER PROTEIN DA1-RELATED 2 126 570 IPR045218 -
Cca06g01396 571 PANTHER PROTEIN DA1-RELATED 2 1 128 IPR045218 -
Cca06g01396 571 Gene3D Cysteine Rich Protein 194 259 - -
Cca06g01396 571 ProSiteProfiles LIM domain profile. 200 260 IPR001781 -
Cca06g01396 571 MobiDBLite consensus disorder prediction 496 517 - -
Cca06g01396 571 Coils Coil 100 142 - -
Cca06g01396 571 SMART uim 43 62 IPR003903 -
Cca06g01396 571 SMART uim 161 180 IPR003903 -
Cca06g01396 571 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 126 570 - -
Cca06g01396 571 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 128 - -
Cca06g01396 571 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 283 - -
Cca06g01396 571 Pfam Protein DA1 351 566 IPR022087 -
Cca06g01396 571 Pfam LIM domain 202 257 IPR001781 -
Cca06g01396 571 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 161 180 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01396 Cca-Chr6 28835434 28840046 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca06g01396 DA1-like 5.1e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01396 - - gmx:100778105 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01396 06 28835434 28840046 Cca06g01396 06 28835434 28840046 ECH
Cca06g01396 06 28835434 28840046 Cca11g01225 11 31268977 31275486 PCT