Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01392 ATGTTGCCAATAGGCATCCAAGTAGTATTTCCTTTATTCTGCAAGTGCCCTTCGAAGAACCAGTTGGACAAAGGGATAAAGTACCTGATTACTTACGTGTGGCAGCCCAGTGACAATGTTTCCCTTGTAAGTGACAAGTTTGATGCATCACCAGAGGACATATTGAGTGAAAACAACTATGGTCAAAACTTGACTGCTGCAAACAACCTTCCAGTTTTGATCCCAGTGACACGCTTGCCAGTTCTTGCTCGATCTCCTTCAGATGGAAGAAAAGGCAGAAATCATCTTCCGGTTATAATCGGTATTAGCCTGGGATGCACATTGCTGGTTGTCGTTTCAATGCTATTACTGGTGTATGTATATTGTCTTAAAATGAAGAGTTTGAATAGGAGTGCTTCATCAGCTGAAACTGCAGATAGGCTACTTTCTGGAGTTTCTGGCTATGTAAGTAAGCCTACAGTGTATGAAACTAATGTGATCATGGAAGGTACTATGAACCTCAGTGAGCAGTGCAAGATTGGGGAATCAGTGTACAAGGCAAACATAGAGGGTAAGGTTTTAGCTATAAAAAGATTCAAGGAAGATGTGGTGGAGCAGCTGAAAATTCTGCAGAAGGTGAATCATGGAAATCTGGTGAAGTTAATGGGTGTCTCATCAGACAATGATGGGAATTGTTTTGTGGTTTATGAATATGCTGAAAATGGGTCTCTTGATGAGTGGCTATTCTCCAAGTCTTCTTCAGAAACATCAAACTCAATGGCCTCCCTTACATGGTGTCAGAGGATAAGCATAGCAGTGGATGTTGCAATGGGTCTGCAGTACATGCATGAACATGCTTATCCAAGAATTGTCCACAGGGACATTACAAGCAGCAATATCCTTCTTGACTCAAACTTTAAGGCCAAGATAGCAAATTTCTCCATGGCCAGAACTTTTACCAACCCCATGATGACAAAAATAGATGTCTTTGCATTTGGGGTGGTTCTGATAGAGTTGCTTACTGGCAGGAAAGCAATAACAACCAAAGAAAATGGTGAGGTGGTTATGCTGTGGAAGGACATATGGAAGATCTTTGATCAAGAAGAGGATAGAGAGGAGAGGTTAAGGAGATGGATGGATCCTAAGTTAGAGAGCTATTATCCTATAGATTATGCTCTCAGCTTGGCCTCCTTGGCTGTGAATTGTACATCAGATAAGTCTTTGTCTAGACCAACCATTGCAGAAATTGTGCTTAGCCTCTCCCTTCTCACTCAACCATCTCCGGCGACATTAGAGAGATCGTTGACTTCTTCTGGATTAGATGTAGATGCTACTCAAATTGTCACTTCCGTAGTGGCTCGTTGA 1344 0.4196 MLPIGIQVVFPLFCKCPSKNQLDKGIKYLITYVWQPSDNVSLVSDKFDASPEDILSENNYGQNLTAANNLPVLIPVTRLPVLARSPSDGRKGRNHLPVIIGISLGCTLLVVVSMLLLVYVYCLKMKSLNRSASSAETADRLLSGVSGYVSKPTVYETNVIMEGTMNLSEQCKIGESVYKANIEGKVLAIKRFKEDVVEQLKILQKVNHGNLVKLMGVSSDNDGNCFVVYEYAENGSLDEWLFSKSSSETSNSMASLTWCQRISIAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMARTFTNPMMTKIDVFAFGVVLIELLTGRKAITTKENGEVVMLWKDIWKIFDQEEDREERLRRWMDPKLESYYPIDYALSLASLAVNCTSDKSLSRPTIAEIVLSLSLLTQPSPATLERSLTSSGLDVDATQIVTSVVAR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01392 447 Gene3D Transferase(Phosphotransferase) domain 1 234 315 - -
Cca06g01392 447 Pfam Protein tyrosine and serine/threonine kinase 192 313 IPR001245 GO:0004672|GO:0006468
Cca06g01392 447 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 2 447 - -
Cca06g01392 447 Gene3D Phosphorylase Kinase; domain 1 165 233 - -
Cca06g01392 447 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 2 447 - -
Cca06g01392 447 ProSiteProfiles Protein kinase domain profile. 135 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01392 447 Gene3D Transferase(Phosphotransferase) domain 1 316 429 - -
Cca06g01392 447 SUPERFAMILY Protein kinase-like (PK-like) 166 413 IPR011009 -
Cca06g01392 447 ProSitePatterns Tyrosine protein kinases specific active-site signature. 283 295 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01392 Cca-Chr6 28821860 28823203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01392 14 416 Receptor kinase-like Gene Family AT3G21630 30.349 2.86e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca06g01392 PK_Tyr_Ser-Thr 2.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01392 - - gmx:100301877 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01392 06 28821860 28823203 Cca06g01392 06 28821860 28823203 ECH