Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01391 ATGCATCTCTTTCCTTACACCCCTATCATCATTTTCACCCTATTGATCCACAGCTTCTCAGTGATTCTGGGGCAGCAACCTTACATTGGTTTAGGCACAGTAGCGTGCCCTCGAAGGGGTAACAAAAATTCTATCCGTGGTTACACTTGTAATGGTGCAAACCATAGCTGCCAAACATACCTTACCTTCAGATCTCAACCCATTTACAACTCTGTCTCCACAATATCCAGTTTATTAGGTTCTGACCCTTCCCAGCTTGCTAAAATAAACTCCGTTTCACTAAATGAAACCTTTGAAACAAACAAGTTGGTGCTTGTTCCTGTAAACTGTTCCTGCGCAGGTGAGTATTATCAAACAAACACATCCTATGTGTTCCAGAATGCAGAAACTTACTTCTTGATTGCCAACAACACTTTTGAGGGTCTCACAACATGTCAAGCTTTGGAGCATCAAAACCGCAACCCTGCAGATATATACCCCGGTAGAAAACTTTTAGTGCCTCTTAGATGTGCTTGTCCAACAAAGAATCAAACCGAGAAAGGCATCAGGTACCTCTTAAGTTACCTAGTAAAGTGGGGTGATTCTGTTTCACTTGTTAGTGAGAAATTTGGTGTCAACTTTATGACCACTCTTGAAGCTAATACCCTTACTTTGACACAATCCATGATCTATCCGTTTACCACACTTCTAGTTCCTCTTCATGATAAGCCCTCTAGTTCTCAAACCGTTTCACCAACTCAACACACTCCACCACCCTCACCTCCCTCTTCTGATAAAAGCTCAAACAAAACATGGGTGTATGTAGTTGTTGGAGTTAGTGTAGGAGCTATTGCCTTGATATCAGCTCTCTGTGCTGTCATTTTCTTCACACGCTATCGCAAAAATCAAAAGCAAGATGGTTCAGTTTCGGCGGTAGCGTCCAAGAGTTTTGTGGCAATTGAGAAAAAACCACAGGGGAATAAGAAAGTAGATGAAAAATTGTCAGAGATCATATCTGGCATAGCTCAATCTTTCAAGGTGTATGGTTTTGAGGAACTACAGCGGGCAACAGATGATTTTAGTCCTAGCTTCTGGATCCAAGGGTCTGTTTATCGCGGTGTGATTAATGGTGATTTGGCTGCAATTAAAAAGATAGAAGGAGATGTGACAAAGGAGATAGAGATACTGAACAAAATCAACCATTCCAATGTTATACGCCTCTCTGGGGTTAGCTTCCACGAGGGGCGTTGGTACCTTGTGTATGAGTATGCTGCTAATGGAGCCTTGAGTGAATGGATCTACTTCAACAACGTGGATGGCAAGTTCCTAAGTTGGACTCAGAGAATGCAAATTGCATTAGATGTGGCCACAGGACTTGACTATCTTCACAGTTTCACTTCTCCTCCTCATATCCACAAGGATATTAAGAGTAGTAACATTCTTTTGGATAGTGATTTCAGGGGAAAGGTTGCAAACTTGAGCCTTGCTAGGTGTTTGGAAGGAGCAGAAGATCAATTTCCTGCGACAAGGCACATTGTTGGGACAAGAGGTTACATGGCCCCGGAATATTTGGAAAATGGTCTTGTGTCTACAAAGCTTGATGTGTATGCTTTTGGGGTGCTTATGCTGGAAATGCTCACTGGAAAAGAGGTTGCTGCTATCTTAACAGAAGATGAGACAAACTTGTCACATGTTTTGAGTACCATACTTGGTGAGAAAAGTGACCAGGAAAGGTTGAAGGAGTTTGTGGATCCCTCTTTGCAAGGAAATTGTCCATTGGAACTTGCTATGTTTGTGATTGAAATGATTGATAAGTGCATCAATAATGATCCGGCCAATCGCCCTAGTGTGCATGAGATTGTACAATCTCTATCAAGAACCCTGAACTCTTCACTGAGTTGGGAAAAGTCGGTGAACATTTCTGGAAACTAG 1911 0.4212 MHLFPYTPIIIFTLLIHSFSVILGQQPYIGLGTVACPRRGNKNSIRGYTCNGANHSCQTYLTFRSQPIYNSVSTISSLLGSDPSQLAKINSVSLNETFETNKLVLVPVNCSCAGEYYQTNTSYVFQNAETYFLIANNTFEGLTTCQALEHQNRNPADIYPGRKLLVPLRCACPTKNQTEKGIRYLLSYLVKWGDSVSLVSEKFGVNFMTTLEANTLTLTQSMIYPFTTLLVPLHDKPSSSQTVSPTQHTPPPSPPSSDKSSNKTWVYVVVGVSVGAIALISALCAVIFFTRYRKNQKQDGSVSAVASKSFVAIEKKPQGNKKVDEKLSEIISGIAQSFKVYGFEELQRATDDFSPSFWIQGSVYRGVINGDLAAIKKIEGDVTKEIEILNKINHSNVIRLSGVSFHEGRWYLVYEYAANGALSEWIYFNNVDGKFLSWTQRMQIALDVATGLDYLHSFTSPPHIHKDIKSSNILLDSDFRGKVANLSLARCLEGAEDQFPATRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVLMLEMLTGKEVAAILTEDETNLSHVLSTILGEKSDQERLKEFVDPSLQGNCPLELAMFVIEMIDKCINNDPANRPSVHEIVQSLSRTLNSSLSWEKSVNISGN 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01391 636 Gene3D LysM domain 173 247 IPR036779 -
Cca06g01391 636 MobiDBLite consensus disorder prediction 237 261 - -
Cca06g01391 636 Gene3D Transferase(Phosphotransferase) domain 1 418 632 - -
Cca06g01391 636 Gene3D Phosphorylase Kinase; domain 1 323 416 - -
Cca06g01391 636 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 9 631 - -
Cca06g01391 636 Pfam Protein kinase domain 363 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01391 636 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 631 - -
Cca06g01391 636 SMART LysM_2 187 232 IPR018392 -
Cca06g01391 636 SMART LysM_2 122 167 IPR018392 -
Cca06g01391 636 SUPERFAMILY Protein kinase-like (PK-like) 337 617 IPR011009 -
Cca06g01391 636 SMART serkin_6 361 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01391 636 ProSiteProfiles Protein kinase domain profile. 310 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01391 636 ProSiteProfiles LysM domain profile. 186 231 IPR018392 -
Cca06g01391 636 Pfam LysM domain 188 232 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01391 Cca-Chr6 28811016 28813188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01391 9 630 Receptor kinase-like Gene Family AT2G23770 43.014 1.72e-171 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca06g01391 Pkinase 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01391 - - gmx:100815842 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01391 06 28811016 28813188 Cca06g01391 06 28811016 28813188 ECH