Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01388 ATGGAGAACGTTAGGCACTACGTACGCACTTTCCTCCTGTTAAGGGAAAGAAAACACCTGGACGAACCTGGAATCTTCCACGAGGTTTTCGGCGAGGACCAATTTGGGGGCATTGCATCTCAAGATTTACTTTTCGAATCAAAATTCTTCGTTTTTCCCCAACCAATTGCTTCTCCCTCAGCCCGAATTGGTTTGGTTGGGAACAGTTCAAACGATGCTGGTGATTTCGAATGCAACATATGCTTTGATTTGGCGCAAGATCCAGTGATCACTCTGTGTGGTCATTTGTTCTGTTGGCCATGCCTCTATAGGTGGCTCCACCATCACTCCCATTCTCAGGAGTGCCCTGTTTGCAAGGCCCTTGTGCAGGAAGAGAAGTTGGTGCCTCTTTATGGAAGAGGCAAATCGCCTACGGATCCCAGGACCAAATCATATCCTGGAATGGAGATCCCTCACCGTCCTTCGGGGCAGAGGCCGCAGACAGCGCCTCCCCCACCTCCTCCCGAGGCCAACCCTTTTGGGAATTATGGGTTTGGACTCATGGGGGGTTTCATTCCCATGGCAACTGCCAGATTTGGAAACTTCACGCTTTCCACTGCCTTTGGTGGCTTTATCCCCTCCCTGCTCAACATTCATTTCCATGGTTTTCAGGATGCCACTGTGTATGGGACAACATCTGGTTACCCGTTCGGGTTCAATGCCTTTCATGGAGGGAACACGAGAGGTTTTACGCAGGCAACTGGCCAAGTGCAGCGGCAAGAGGACAATGTCTTGAAGAATCTTCTTTTGTTGATTGGATTTCTTGTCCTTCTTACGGTTATTTTTGTGTATTAA 834 0.4904 MENVRHYVRTFLLLRERKHLDEPGIFHEVFGEDQFGGIASQDLLFESKFFVFPQPIASPSARIGLVGNSSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKSPTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPPEANPFGNYGFGLMGGFIPMATARFGNFTLSTAFGGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNAFHGGNTRGFTQATGQVQRQEDNVLKNLLLLIGFLVLLTVIFVY 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01388 277 SUPERFAMILY RING/U-box 74 131 - -
Cca06g01388 277 MobiDBLite consensus disorder prediction 131 172 - -
Cca06g01388 277 ProSitePatterns Zinc finger RING-type signature. 93 102 IPR017907 -
Cca06g01388 277 CDD RING-HC_AtRMA_like 76 120 - -
Cca06g01388 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 65 275 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cca06g01388 277 SMART ring_2 78 118 IPR001841 -
Cca06g01388 277 Pfam Zinc finger, C3HC4 type (RING finger) 77 118 - -
Cca06g01388 277 PANTHER RING ZINC FINGER PROTEIN-RELATED 65 275 - -
Cca06g01388 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 132 IPR013083 -
Cca06g01388 277 ProSiteProfiles Zinc finger RING-type profile. 78 119 IPR001841 -
Cca06g01388 277 MobiDBLite consensus disorder prediction 157 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01388 Cca-Chr6 28772060 28778443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01388 68 275 C3H Transcription Factor Family AT2G23780 63.380 2.09e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01388 K10666 - gmx:100814783 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01388 06 28772060 28778443 Cca06g01388 06 28772060 28778443 ECH