Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01376 ATGAATCATCGACCTTTCCAAGACCCCATGATGCTCATCTCTCAGCTATACCCTGGCGATGCATATACTCAAATAATAGCTCAACAAGGTGAGAAGAAGCCAAGACGTCGTCGTAATAAGAAGAACAAAGGAGGAGAAAACAGTGCCTCGGAAGCCAACAAGAAGAGGAAGCTTAGTGTGGAGCAAGTTAATTTGCTTGAGCAAAACTTTGGAAGTGAACATAAACTCGAGTCAGAAAGGAAGGACAAGCTCGCAATGGAGCTTGGTTTGGACCCTCGACAAGTTGCTGTGTGGTTTCAAAACAGAAGAGCTCGTTGGAAGAACAAAAAATTGGAAGAAGAGTACTCTAGCCTTAAAAAAACTCATGAATCAACCTTGCTTGAGAAATGTCGCCTTGAGAGTGAGGTGCTGAAACTCAAGGACCAACTTTCCGAAGCAGAAAAGGAGATACAAAGGTTGCTACAGAGTGCTGATAGAGTCCCCAGCAACAGTTCTAGTTCGTCACAGTCACAATCAGTGGAAGCGTTGGACCCACCATTTTTAGGGGAATTTGGAGTTGATGGATATGATGATGATGTGTTTTACGTGCCTGAGACCCATTATATCAACGGCATGGAGTGGATTAATTTGTACATGTAA 639 0.4335 MNHRPFQDPMMLISQLYPGDAYTQIIAQQGEKKPRRRRNKKNKGGENSASEANKKRKLSVEQVNLLEQNFGSEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKTHESTLLEKCRLESEVLKLKDQLSEAEKEIQRLLQSADRVPSNSSSSSQSQSVEALDPPFLGEFGVDGYDDDVFYVPETHYINGMEWINLYM 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01376 212 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Cca06g01376 212 SUPERFAMILY Homeodomain-like 53 118 IPR009057 -
Cca06g01376 212 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Cca06g01376 212 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Cca06g01376 212 Gene3D - 45 118 - -
Cca06g01376 212 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Cca06g01376 212 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Cca06g01376 212 Coils Coil 101 156 - -
Cca06g01376 212 MobiDBLite consensus disorder prediction 43 58 - -
Cca06g01376 212 MobiDBLite consensus disorder prediction 28 58 - -
Cca06g01376 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 211 - -
Cca06g01376 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 211 IPR045224 GO:0003700
Cca06g01376 212 CDD homeodomain 54 110 IPR001356 GO:0003677
Cca06g01376 212 SMART HOX_1 52 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01376 Cca-Chr6 28612265 28614227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01376 1 212 Homeobox Transcription Factor Family AT4G36740 58.371 8.48e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Cca06g01376 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01376 K09338 - gmx:100809616 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01376 06 28612265 28614227 Cca06g01376 06 28612265 28614227 ECH
Cca06g01376 06 28612265 28614227 Cca11g01211 11 30701142 30710668 PCT