Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01374 ATGAGAGTTCCCGTTCCCTCATCCCCACAGGCCAACCCAAAACCCAGTAACGCAACCCGTACCATTGCCCTTCCCAACAACACGGGCCTCGGCTACGAGCCCACTTCCGTCCTCGACCTGTGCCGGAGCCCAAGCCCGGCCACCGTCCCCGACAAACCCACCGATCACTCCGTTGTCGAGCTGGACGACCATGCGTTGCACAACTTGGATTGGGACTCCATCATGAAGGACCTGGGCTTACACGACGACTCGGGTGCCCCCGTTTTGAAGACAAATGAAAACAACAACACGTGCGAAGATTTCACACCCTTCGACCACGCGCTTGAATTCACCACTCTCTCCGACATGTACTCTAACTCGACCCAAAACCAAAACCTCGCTTACAATAACTACCCTGCAAACGCCACACTCGATCACTTAATTCACGACTTCAATCACAACGGTTTTGATTTCATCGAAGACCTCATCCGCGCCGCTGATTGCTTCGACACCAAGCAATTACACGTGGCGCAAGTGATATTGGAGCGGCTCAATCAACGGCTACGATCCCCCGCGGGAAAACCGCTTCAGCGCGCAGCGTTTTACTTCAAAGAAGCTCTGGAGTCTCTCCTCTCCGGTTCGAACCGGACACCGAGGCTTTCTTCGTTGGTGGAAATCGTGCACAGTATCAGAACCTTCAAGGCCTTCTCCGGAATCTCACCGATCCCCATGTTCTCCATCTTCACCACTAACCAAATCGTTCTCGATCACGCTGCCTCCTCCTTCATGCACGTCATCGACTTCGACATCGGCCTCGGGATCCAGTACGCTTCTCTCATGAAGGAGATTGCGGAGAAGGCCGCGGAATCGCCGGTTCTGAGAATCACCGCCGTCGTTCCCGAAGAGTTCGCCGTCGAGAGCACGCTCGTCCGCGACAACCTCGCGCAGTTCGCTCTCGAGCTCAGGATCCGCGTCCACGTCGAATTCGTGCCGCTTCGGACCTTCGAGACAATCTCCTTCAAGGCGGTGAAGCTCGTCGACGGCGAGAAGACCGCTGTGCTCTTGTCGCCGGCGATTTTCCGCCACCTCGGCAACACCGCCGCGTTCCTGGCGGACGTGCGGAGGATCTCGCCTGGCGTGGTGGTTTTCGTGGAcggcgagggctgggcggagtcggcgactgcggcggtggcgtcgttccggcgcggcgTTGTGAGCAGCCTGGAGTACTACTCGATGATGTTGGAGTCGCTGGACGCTTCGACGGTGGTGGGAGGAGGGGAGTGGGTGAGGAGAATAGAGATGCTGCAGGTGCGGCCGAGGATTTTGGCGGCGGTGGAGAGCGCGTGGCGGCGGATGCCTCCGTGGAGGGAGGCGTTTTACGGTGCCGGAATGAGGCCGGTGCAGTTAAGCCAGTTCGCGGATTTTCAAGCGGAGTGCTTGTTGGCGAAGTCGCAAATCAGAGGCTTCCACGTGGCGAAACGTCAGAACGAACTGGTTTTGTTCTGGCACGATCGCGCCATGGTTGCCACGTCAGCGTGGCGCTGTTAG 1530 0.5536 MRVPVPSSPQANPKPSNATRTIALPNNTGLGYEPTSVLDLCRSPSPATVPDKPTDHSVVELDDHALHNLDWDSIMKDLGLHDDSGAPVLKTNENNNTCEDFTPFDHALEFTTLSDMYSNSTQNQNLAYNNYPANATLDHLIHDFNHNGFDFIEDLIRAADCFDTKQLHVAQVILERLNQRLRSPAGKPLQRAAFYFKEALESLLSGSNRTPRLSSLVEIVHSIRTFKAFSGISPIPMFSIFTTNQIVLDHAASSFMHVIDFDIGLGIQYASLMKEIAEKAAESPVLRITAVVPEEFAVESTLVRDNLAQFALELRIRVHVEFVPLRTFETISFKAVKLVDGEKTAVLLSPAIFRHLGNTAAFLADVRRISPGVVVFVDGEGWAESATAAVASFRRGVVSSLEYYSMMLESLDASTVVGGGEWVRRIEMLQVRPRILAAVESAWRRMPPWREAFYGAGMRPVQLSQFADFQAECLLAKSQIRGFHVAKRQNELVLFWHDRAMVATSAWRC 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01374 509 Pfam GRAS domain family 152 508 IPR005202 -
Cca06g01374 509 ProSiteProfiles GRAS family profile. 142 508 IPR005202 -
Cca06g01374 509 PANTHER SCARECROW-LIKE PROTEIN 15 7 508 - -
Cca06g01374 509 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 508 IPR005202 -
Cca06g01374 509 MobiDBLite consensus disorder prediction 12 29 - -
Cca06g01374 509 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01374 Cca-Chr6 28588637 28590736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01374 59 508 GRAS Transcription Factor Family AT4G36710 54.219 6.03e-167 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca06g01374 GRAS 1.5e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01374 - - gmx:100784206 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01374 06 28588637 28590736 Cca06g01374 06 28588637 28590736 ECH
Cca06g01374 06 28588637 28590736 Cca11g01207 11 30428488 30430800 PCT