Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01367 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCCGGCAATCAGACAGTGCCGCCAAAACCTGCAACTAAGAAGAAGCGAAACCTGCCAGGACTGCCAGATCCGGATGCAGAGGTGATTGCTTTGTCGCCGAAGACCCTGATGGCTACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGATCAGAACCTTCAGCTTCATCGAAGGGGTCACAATCTGCCATGGAAGCTTCGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGGGTGTACGTGTGCCCCGAACCCACGTGCGTCCACCACGATCCTTCTAGAGCCTTGGGGGATCTCACGGGGATTAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGCACCCGAGAGTACAAATGCGATTGTGGCACTCTATTCTCGAGGAGGGATAGCTTCATCACGCATAGGGCCTTTTGTGATGCGTTGGCAGAGGAAAGTGCGAGATCTCAGCCTCCGACTGCTGCGAAGGCTAGTTCGGAGTCAGATTCGAAGGCTGTGACTGGTGATTcgccgcccccgccgccgccgacggcgGGGGCAGTGGCGGCTCCGCCTCCACTGCCACCTAGTTCTCAGTCAACCAGTGTTGTTGTATTGCAGACACAAAATCCAGAGTTGCCTGAAAATTCCCCACAAATCGTAGAAGAACCGCAGGCCAATACTGCTATGAATGGGAGCTGTAGCAGCACCAGCACCACCAGCTCAACTAGCAATAGCAATAGTGGTACTGGCAGCAGTGTATTTGCAAGCTTGTTTGCTTCATCAACAGCATCTGGAACCGCAAGCCTTAGCCTCCAATCTCAAACACCAGCATTCACTGACCTAATTAGGGCCATGGGACACCCAGATCACCCTGGTGACCTCTCAAGGCCTTCATCATCGGAGCCCATTTCTCTGTGCCTTTCTACCAATCATGGGTCATCCATTTTCGGAACGGGAGGGCAGGAGCGCCGTCAGTATGCCCCACCACCACAGCCAGCCATGTCTGCCACTGCATTACTGCAGAAAGCTGCCCAAATGGGTGCAACTGCAACAAACGCCTCTTTTCTTCGTGGATTAGGCATAGTGTCATCTTCTGCATCAACCTCATCTGGCCAACAAGATAGTATGCAATGGGGTCAGCAGCCAGTTGAGCCGGAGGGTACCTCAGTTCCTGCAGGTCTTGGACTCGGGCTTCCTTGCGACGGTAGCTCTGGACTCAAGGAGTTAATGATGGGGACTCCCTCCATGTTTGGTCCAAAGCAGACCACCCTCGATTTTCTCGGGTTGGGGATGGCAGCTGGGGGCACCCCTGGTGGAGGCTTATCGGCACTCATCACCTCCATTGGTGGTGGTCTGGATGTCACTGCTGCTGCAGCATCCTTTGGTAGTGGAGAATTTCCTGGCAAAGATATTGGGAGGAGCACTTGA 1548 0.5233 MPVDLDNVSTASGEASVSSSGNQTVPPKPATKKKRNLPGLPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPPTAAKASSESDSKAVTGDSPPPPPPTAGAVAAPPPLPPSSQSTSVVVLQTQNPELPENSPQIVEEPQANTAMNGSCSSTSTTSSTSNSNSGTGSSVFASLFASSTASGTASLSLQSQTPAFTDLIRAMGHPDHPGDLSRPSSSEPISLCLSTNHGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGATATNASFLRGLGIVSSSASTSSGQQDSMQWGQQPVEPEGTSVPAGLGLGLPCDGSSGLKELMMGTPSMFGPKQTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVTAAAASFGSGEFPGKDIGRST 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01367 515 Gene3D Classic Zinc Finger 115 195 - -
Cca06g01367 515 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cca06g01367 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cca06g01367 515 MobiDBLite consensus disorder prediction 404 426 - -
Cca06g01367 515 MobiDBLite consensus disorder prediction 1 43 - -
Cca06g01367 515 MobiDBLite consensus disorder prediction 190 243 - -
Cca06g01367 515 Gene3D Classic Zinc Finger 42 107 - -
Cca06g01367 515 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cca06g01367 515 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 514 - -
Cca06g01367 515 MobiDBLite consensus disorder prediction 404 424 - -
Cca06g01367 515 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 514 - -
Cca06g01367 515 MobiDBLite consensus disorder prediction 197 212 - -
Cca06g01367 515 MobiDBLite consensus disorder prediction 214 237 - -
Cca06g01367 515 MobiDBLite consensus disorder prediction 9 29 - -
Cca06g01367 515 SMART c2h2final6 137 157 IPR013087 -
Cca06g01367 515 SMART c2h2final6 102 132 IPR013087 -
Cca06g01367 515 SMART c2h2final6 61 83 IPR013087 -
Cca06g01367 515 MobiDBLite consensus disorder prediction 265 289 - -
Cca06g01367 515 MobiDBLite consensus disorder prediction 323 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01367 Cca-Chr6 28532615 28537467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01367 1 515 IDZ Gene Family AT5G66730 59.740 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g01367 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01367 K25869 - gmx:100806404 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01367 06 28532615 28537467 Cca06g01367 06 28532615 28537467 ECH
Cca06g01367 06 28532615 28537467 Cca11g01204 11 30337907 30341463 PCT