Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01356 ATGTCTTCAAAACCTCATAATAATTCTCCTGATAACGCATCACCTGATGACTCTACCCCTGATAACAGCACCCCTGATGATGCTGACAACTCATCTTcaccaccctcacaatctccaccaccaagctcacctcctccgtcatcaccgccaccatcttcgacaccaccttcgccgccaccaccttcgtcacctccaccgtcatcttcatcctcaccaccctctcctcctcctcctccTTCGTCAAACAACCCAAGCCCTCCATCACCAAATGGGTCCCCCCAGTCACCTCCTCCACCCACATCAACACGTTCTCCACCCTCCTTTGAATCACCTCCACACAAATCACTACAACCTCCATCGCATCAAACTGAcggtgccagtagaagcggcagcaagaatggcggtggcagtagcggcaataatacaggcagtggtggtggcggtagtggcaatgacgataatagtAAGGCCATAGTTGGAGCAGTGCTTGGCGTAGGGAGCGTGCTTCTTATTTTGGTCATCGTTTGCGTTGTTTGCTCCAGAAGGAAGAAGAAGAAGAGAATGTACTATTATGGTCCTGGAGAGCAATCACTTGGAGGAAAAGGGAATAACTATGCTGGGAATAACTATTACAACAGCGGGCAACACCCAGGTTATTACGGAAATCCTCACGGGGACCATGTTGTGAGGGTACAAAACGGAATGGGCCCTGGCGGCGGTGGCGGTGCTGACATGAGCTCTAACTACTCAACAGGACCAACCCCTTTGCCTCCTCCCTCACCAACCCTTGCCCTAGGCCTCAAAGGTGGAACCTTCAGTTACGAGGAACTTGCAGCTGCCACCAACGGATTCGCCGATGTAAACTTGATAGGACAAggtggcttcggttatgtccataagggtgtgttgcctaatggcaaggaagtagcagttaagagccttaaatcaggtagtggccagggagaacgagagttccaagctgagattgacatcattagtcgtgtccaccatcgtcatcttgtgtcacttgttggatactgtatttctggtggccagagaatgttggtctatgagttcattcccaataacacattggagtatcATCTTCATGGAAAGGGTAGGCCTACTATGGATTGGCCTACTAGAATGAGGATTGCAATAGGATCTGCTAAAGGTCTTGCTTATCTTCATGAGGACTGTCATCCTCGCATTATTCATCGTGATATTAAAGCTGCGAATGTCCTTATTGATGATAGCTTCGAAGCAAAGGTTGCGGATTTTGGACTGGCTAAGTTGACCACTGATAATAATACTCATGTGTCCACTCGTGTCATGGGAACTTTCGGgtacctagcccctgaatatgcgtcaagtggaaaactgacagagaagtctgatgttttctcatttggggtcatgctgctggaACTTGTAACTGGGAAGCGACCTGTGGATCACACAAATGTCATGGACGACAGCTTAGTAGATTGGGCTCGACCACTACTAACTCGTGGATTGGAGGAAGATGGCAACTTTGGAGAGTTAGTTGATCCATTTTTAGAGGGAAACTACAATCCTCAAGAGCTGTCAAGGATGGCAGCTTGTGCTGCTGCTAGCATTCGTCATTCTTCCAAGAAACGTCCAAAAATGAGCCAGATTGTGAGAATATTGGAAGGAGATGTCTCATTGGATGACTTGAAAGATGGGATTAGGCCAGGGCAAAATGCTATATACAACTCTTCTGGGAGCTCAGATCAGTATGATACAATGCAATACAATGCTGATTTACAGAAGTTTAGAAAAGCAGTGTTTTCTAATAGCGATGAATTTGGCACCAGTAGTGGCTCTAGTGCAGAAGTGAGCCAGAGGCAACCAAGGCTTTAG 1884 0.3307 MSSKPHNNSPDNASPDDSTPDNSTPDDADNSSSPPSQSPPPSSPPPSSPPPSSTPPSPPPPSSPPPSSSSSPPSPPPPPSSNNPSPPSPNGSPQSPPPPTSTRSPPSFESPPHKSLQPPSHQTDGASRSGSKNGGGSSGNNTGSGGGGSGNDDNSKAIVGAVLGVGSVLLILVIVCVVCSRRKKKKRMYYYGPGEQSLGGKGNNYAGNNYYNSGQHPGYYGNPHGDHVVRVQNGMGPGGGGGADMSSNYSTGPTPLPPPSPTLALGLKGGTFSYEELAAATNGFADVNLIGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCISGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELVTGKRPVDHTNVMDDSLVDWARPLLTRGLEEDGNFGELVDPFLEGNYNPQELSRMAACAAASIRHSSKKRPKMSQIVRILEGDVSLDDLKDGIRPGQNAIYNSSGSSDQYDTMQYNADLQKFRKAVFSNSDEFGTSSGSSAEVSQRQPRL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01356 627 MobiDBLite consensus disorder prediction 107 150 - -
Cca06g01356 627 PRINTS Proline rich extensin signature 59 75 - -
Cca06g01356 627 PRINTS Proline rich extensin signature 76 93 - -
Cca06g01356 627 PRINTS Proline rich extensin signature 35 56 - -
Cca06g01356 627 PRINTS Proline rich extensin signature 23 35 - -
Cca06g01356 627 PANTHER RECEPTOR-LIKE KINASE 47 620 - -
Cca06g01356 627 MobiDBLite consensus disorder prediction 1 150 - -
Cca06g01356 627 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Cca06g01356 627 ProSiteProfiles Protein kinase domain profile. 284 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01356 627 MobiDBLite consensus disorder prediction 608 627 - -
Cca06g01356 627 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 47 620 - -
Cca06g01356 627 Gene3D Phosphorylase Kinase; domain 1 263 359 - -
Cca06g01356 627 Gene3D Transferase(Phosphotransferase) domain 1 360 568 - -
Cca06g01356 627 MobiDBLite consensus disorder prediction 1 33 - -
Cca06g01356 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Cca06g01356 627 Pfam Protein tyrosine and serine/threonine kinase 289 488 IPR001245 GO:0004672|GO:0006468
Cca06g01356 627 MobiDBLite consensus disorder prediction 34 106 - -
Cca06g01356 627 SMART serkin_6 284 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01356 627 SUPERFAMILY Protein kinase-like (PK-like) 263 557 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01356 Cca-Chr6 28422719 28427656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01356 137 608 Trihelix Transcription Factor Family AT1G70460 50.916 7.85e-153 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca06g01356 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01356 - - gmx:100777163 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01356 06 28422719 28427656 Cca06g01356 06 28422719 28427656 ECH