Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01354 ATGGCGGATTTCAACAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAGGCCCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCACCCGACTGGTCTCACGGCAAACCTGTTGAAGCTCTTCGAGCCTCGGCCTCCGTTGGAGTACAAGCCACCGCCGGAGAAACGGAAATGTCCGCCGTTAACAGGGATGGCGCAATTTGTGGGCAAGTTTGCCGAGCCTGGCGATCCAGAATATGCTCCACCTGTTCCAGAAACTGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCTAAGGCTGCAGAGGAGCTTGAGAAATATGATCCACATAATGACCCAAATGCATCTGGAGATCCATATAAGACATTGTTTGTGGCTAAACTCAGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAAAGGGTCCGATTAGTTGCTGACAAAGAGACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTCGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTAGGTGGTGGGCTTGGTACTACTAGAATTGGGGGTGATGAAGTTAATCAGCGACACTCTGGGAGGGAGCAACAACAGCCTCGTTCTGAAGAACCAAGAGCGAGGGATGATCGACATGGTGATAGGGACAGGGAAATGTCACGTGAAAGAGGTAGGGACAGAGATAAAGAACGAGAGCGATCACGTGAACATTCTCATGAAAGGGTCAGGGGTCGTGATCATAGAGAGGATAGGCACCACAGAGACCGAGAGAGGACTAgggatagagacagagacagggaaagagatagagaccggggacgtgatcgggatagggaccgtggacgtgatcgagatagggatcgtggacgggatcgtgagcgagagagggaccgtgatcgggaccgagatTATGAAGTTGGGGACACTGATCGAGGACGCTCACGTGATAGGGAGACTGATTATGATCGTGTTGAATCTAAACATGAGAGGAACCAACATGAGGAAAGGAATCATGACTATGAGCCTGAGGATGATCGTGGTTGGTATAACCATGGACATAGGCATGCAGACCCTGATCATGACCCTGAGCAGTATGACCACTACAATCATGGAGATGACCGTGGTGACCATTACGGTCAGTATCCTGACCATGATCGTACAGAAGGTGACTACCATACTGGACGTGCAACATCCGAATCACGAGAAAAGGAAAGAAGTCATGATATGGACCGTGAATATAGACGCTCAGAGAGATCTCATTCCCGGGAGTATGAATACTAG 1449 0.4417 MADFNNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVGKFAEPGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNASGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKETNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRIGGDEVNQRHSGREQQQPRSEEPRARDDRHGDRDREMSRERGRDRDKERERSREHSHERVRGRDHREDRHHRDRERTRDRDRDRERDRDRGRDRDRDRGRDRDRDRGRDRERERDRDRDRDYEVGDTDRGRSRDRETDYDRVESKHERNQHEERNHDYEPEDDRGWYNHGHRHADPDHDPEQYDHYNHGDDRGDHYGQYPDHDRTEGDYHTGRATSESREKERSHDMDREYRRSERSHSREYEY 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01354 482 PANTHER - 8 362 - -
Cca06g01354 482 MobiDBLite consensus disorder prediction 85 105 - -
Cca06g01354 482 MobiDBLite consensus disorder prediction 244 482 - -
Cca06g01354 482 SUPERFAMILY RNA-binding domain, RBD 129 242 IPR035979 GO:0003676
Cca06g01354 482 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 44 132 IPR022023 -
Cca06g01354 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Cca06g01354 482 CDD RRM_snRNP70 140 230 IPR034143 GO:0030619
Cca06g01354 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 212 IPR000504 GO:0003723
Cca06g01354 482 SMART rrm1_1 142 215 IPR000504 GO:0003723
Cca06g01354 482 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 8 362 - -
Cca06g01354 482 MobiDBLite consensus disorder prediction 223 482 - -
Cca06g01354 482 Gene3D - 128 255 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01354 Cca-Chr6 28407838 28413111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01354 143 189 C2H2 Transcription Factor Family AT2G19380 38.298 1.57e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01354 K11093 - gmx:100800903 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01354 06 28407838 28413111 Cca06g01354 06 28407838 28413111 ECH