Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01352 ATGGAGGCGAAGGATAAAGTGAAGGAAGAGGATACCGCAGTGGAGTCTCCAACTTCTGTCCTTGAAGACGAGGATGTCTGTGCCACGAAAGAGGAAGTTAAGTCTGAAGAAGAGGTGATTGCTGATGTTAAAGACGATGGATCCTCGCTTATATCGAAAACAATGGCGGAGGAGGAAGAGAAGTTACTCGAAGCCAGGATGAAGGAAGAGGAGGTGCAGTGTGAGGAGGCGCTGGACCTAAATGACACTCAGTTTAACAAATTGGATGAGCTTTTAACTCAAACCAAGCTGTACTCTGAGTTTCTGATGGAGAAAATGGATGACATCACACTTACCGTGGGTGAACAAGAGAATGAGGAAGAGCAAGAGGCCAATCCTTCTGCAAAGAAGAAGGGCCGTGGATCAAAAAGAAAAGCTGCTTCACAGTACAATACTAGGAAGGCCAAACAGGCAGTTGCTGCCATGCTGACCAGATCTAAAGAAAGTGAGGAGACTGAAGATACGAACATGAGTGAGGAAGAAAAAGTTGAGAAAGAGCAGAAAGAGCTCATGCCTTTACTGACAGGTGGGAAATTGAAGCCTTATCAACTCAAGGGTGTAAAGTGGCTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGATTTCTCTCGCATCTTAAAGCAAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTGTCAACCCTCTCAAACTGGATGAATGAGATTTCTAGATTTGCCCCATCACTCCCTGCCATTATCTACCATGGTGACAAGAAACAGAGAGATGAGATCCGAAGGAAGCATATGCCTAGAGCCATTGGCCCAAAATTTCCTATAGTCATAACATCTTATGAGATTGCTTTAAATGATGCAAGGAAATATTTCAGGCCATACAATTGGAAATATCTTGTTGTTGATGAGGGACACAGACTCAAAAACTCACAATGCAAATTAGTGAAGGAATTGAAATACATAAATGTTGAAAACAAGATTCTTCTAACGGGAACTCCTCTTCAGAATAATTTGGCAGAACTATGGTCTCTGTTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCTGGAAAATGCAATAATGGGACAACCAAGGAAGAACTGGAAGACAAGCGAAGAGCTCAAGTAGTAGCAAAGCTTCATGCAATTCTTCGACCCTTTCTTTTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCACGGAAAAAGGAAATTATTATCTATGCAAACATGACTGAGCATCAAAAGAATTTGCAGGATCATTTAATTAATAAAACGTTGGAGAACTATTTACAGGAAAAATCATTAAATGGACATGCTGTACGTAAGATTCATAATTTGGTTATTCAACTTCGGAAGGTGTGCAACCATCCTGACCTCATAGCTTCACCCTTTGATGGTTCATGTTTATATCCTCCTGTAAACGAGATAGTTGAACAATGTGGGAAGTTCAATTTGCTTGATCGATTGCTGCAACTTTTATTTGCAAGGAATCACAAGGTTCTTATCTTCAGTCAGTGGAGTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAGAAGGGCTATGAAGTTTGCAGGATTGATGGTAGTGTGAAACTGGATGAAAGGAAGCGACAGATCCAGGAATTCAATGATGCAAATAGCAATTGCAGAATTTTTCTTCTTTCTACAAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCATAGAATAGGCCAAACAAAGCCTGTGCATGTTTACAGGCTCTCGACAGCTCAATCCGTGGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTGGAGCATTTAGTGATTGAGAAAGGACAGTTTCATCACGAACGTTCAAAACCTGTCAGTACGGATGAAATGGAGGAAGAGGATGTATTGGCATTGCTTCGAGAAGACGAAACAGCCGAAGATAAAATGATACAAACAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGTGATCTTGTGATCAATAACTCGAACGATGATAACTGTAAAGCTCCAAGCAGTTCCTTTCCTCTTAAAGGGAGAGGGTGGGAGGTGGTGATTCCAACTGCCACTGGGGGAATGCTCTCTACTCTTAACAGCTAG 2283 0.4139 MEAKDKVKEEDTAVESPTSVLEDEDVCATKEEVKSEEEVIADVKDDGSSLISKTMAEEEEKLLEARMKEEEVQCEEALDLNDTQFNKLDELLTQTKLYSEFLMEKMDDITLTVGEQENEEEQEANPSAKKKGRGSKRKAASQYNTRKAKQAVAAMLTRSKESEETEDTNMSEEEKVEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWMNEISRFAPSLPAIIYHGDKKQRDEIRRKHMPRAIGPKFPIVITSYEIALNDARKYFRPYNWKYLVVDEGHRLKNSQCKLVKELKYINVENKILLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSGKCNNGTTKEELEDKRRAQVVAKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTEHQKNLQDHLINKTLENYLQEKSLNGHAVRKIHNLVIQLRKVCNHPDLIASPFDGSCLYPPVNEIVEQCGKFNLLDRLLQLLFARNHKVLIFSQWSKVLDIMDYYFSEKGYEVCRIDGSVKLDERKRQIQEFNDANSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAFSKLKLEHLVIEKGQFHHERSKPVSTDEMEEEDVLALLREDETAEDKMIQTDISDEDLEKLLDRSDLVINNSNDDNCKAPSSSFPLKGRGWEVVIPTATGGMLSTLNS 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01352 760 Coils Coil 162 182 - -
Cca06g01352 760 MobiDBLite consensus disorder prediction 1 15 - -
Cca06g01352 760 Gene3D - 156 421 IPR038718 -
Cca06g01352 760 Pfam Helicase conserved C-terminal domain 519 628 IPR001650 -
Cca06g01352 760 Gene3D - 428 730 IPR027417 -
Cca06g01352 760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 518 682 IPR001650 -
Cca06g01352 760 MobiDBLite consensus disorder prediction 1 33 - -
Cca06g01352 760 CDD SF2_C_SNF 504 638 - -
Cca06g01352 760 Pfam SNF2-related domain 195 493 IPR000330 GO:0005524|GO:0140658
Cca06g01352 760 MobiDBLite consensus disorder prediction 159 180 - -
Cca06g01352 760 SMART helicmild6 544 628 IPR001650 -
Cca06g01352 760 SMART ultradead3 188 383 IPR014001 -
Cca06g01352 760 PANTHER SNF2/RAD54 HELICASE FAMILY 3 759 - -
Cca06g01352 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 714 IPR027417 -
Cca06g01352 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 422 IPR027417 -
Cca06g01352 760 PANTHER BNAC07G16550D PROTEIN 3 759 - -
Cca06g01352 760 MobiDBLite consensus disorder prediction 114 180 - -
Cca06g01352 760 Coils Coil 53 80 - -
Cca06g01352 760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 372 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01352 Cca-Chr6 28379233 28385660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01352 165 649 RAD5 or RAD16-like Gene Family AT1G02670 26.344 1.40e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca06g01352 SNF2_N 5.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01352 K19001 - gmx:100777687 1308.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01352 06 28379233 28385660 Cca06g01352 06 28379233 28385660 ECH