Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01351 ATGTCTGACTCACTCCTAACTTTCTATTCTCTttcatccatccttgctcttctcccactcttcatcttcattctcatcAAAAGAAAGCAAGCCAAGCCCAGGCTCAACCTTCCCCCTGGTAACATGGGCTGGCCTTTTCTTGGGGAAACCATTGCCTATTTGAGCCCTTATTCTGCCACCACAATAGGGGAATTCATGGAGCAACACATAGCAAGGTATGGTACAATTTACAAGTCGAAACTGTTTGGGGAGCCAGCAATAGTGTCAGCAGATGCAGGACTGAACAGGTTCATTCTACAGAACGAAGGGAAATTGTTCGAGTGCAGCTATCCCAGAAGCATTGGTGGAATACTAGGGAAATGGTCCATGTTGGTCTTAGTGGGTGACATGCACAGAGACATGCGGGTTATATCACTCAACTTTCTAAGCCACGCCAGGCTCAGAACACACCTCTTGAAAGAGGTGGAGAAGCACACCCTCCTTGTTCTCAACTCTTGGAACCAAAATTCCACTTTCTCAGCCCAAGATGAAGCTAAGAAGTTCACCTTCAATTTGATGGCTAGGCATATCATGAGCATGGATCCTGGGGATATTGAGACAGAGCAACTGAAGAAAGAGTACGTCACTTTCATGAAAGGGGTGGTATCCGCGCCATTGAATTTTCCTGGAACTGCATATCGAAAGGCATTGAAGTCTCGGTCCACCATACTGAAGTTTATAGAGGGGAAAATGGAAGACAGAGTTAAGAGAATTCAAGAGGGGAATGAAAATTTGGAGGAAGATGATCTTCTAAACTGGGTTTTGAAGCATTCAAACCTTTCCACAGAGCAAATTCTTGACTTGATTCTCAGTTTGCTCTTCGCTGGCCATGAAACTTCGTCGGTGGCCATAGCTCTAGCTATTTATTTCTTGCCTGGTTGTCCTCAAGCTATACAACAGTTAAGGGAAGAACACAGAGAAATTGCCAGAGCCAAGAAGCAAGCAGGGGAAGTTGAACTGACTTGGGAAGACTACAAAAGAATGGAATTTACTCATTGTGTTGTGAACGAGACGCTAAGGTTGGGAAATGTTGTGAGGTTTCTGCACAGGAAAGCTGTGAAAGATGTTAACTACAAAGGTTATGACATTCCATGTGGGTGGAAAGTCCTTCCGGTGATTGCAGCCGTGCATCTGGATCCTTCACTTTTTGACCAGCCTCAACACTTCAATCCATGGAGATGGCAGAACAATGGTAGTCGTGGAAGTTGCCCCAGCAAGAGCACAACGAACAATAACTTTCTTCCGTTCGGGGGAGGACCACGACTATGTGCAGGATCAGAGTTAGCAAAGCTTGAAATGGCAGTTTTCATCCACCATCTCATCCTTAACTACCATTGGGAATTGGCTGATACCGATCAACCTTTTGCATACCCTTTTGTCGATTTCCCCAAAGGCCTACCCATCAGAGTCCAACCCCACTCTTTGCTTCCAAATTACTTCACTTCACTTCACCCTACCCTATAA 1503 0.4385 MSDSLLTFYSLSSILALLPLFIFILIKRKQAKPRLNLPPGNMGWPFLGETIAYLSPYSATTIGEFMEQHIARYGTIYKSKLFGEPAIVSADAGLNRFILQNEGKLFECSYPRSIGGILGKWSMLVLVGDMHRDMRVISLNFLSHARLRTHLLKEVEKHTLLVLNSWNQNSTFSAQDEAKKFTFNLMARHIMSMDPGDIETEQLKKEYVTFMKGVVSAPLNFPGTAYRKALKSRSTILKFIEGKMEDRVKRIQEGNENLEEDDLLNWVLKHSNLSTEQILDLILSLLFAGHETSSVAIALAIYFLPGCPQAIQQLREEHREIARAKKQAGEVELTWEDYKRMEFTHCVVNETLRLGNVVRFLHRKAVKDVNYKGYDIPCGWKVLPVIAAVHLDPSLFDQPQHFNPWRWQNNGSRGSCPSKSTTNNNFLPFGGGPRLCAGSELAKLEMAVFIHHLILNYHWELADTDQPFAYPFVDFPKGLPIRVQPHSLLPNYFTSLHPTL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01351 500 PANTHER BNAC01G23810D PROTEIN 66 485 - -
Cca06g01351 500 SUPERFAMILY Cytochrome P450 34 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 Pfam Cytochrome P450 38 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PRINTS P450 superfamily signature 288 305 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PRINTS P450 superfamily signature 427 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PRINTS P450 superfamily signature 436 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PANTHER CYTOCHROME P450 26 66 485 - -
Cca06g01351 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 429 438 IPR017972 GO:0005506|GO:0016705
Cca06g01351 500 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PRINTS E-class P450 group I signature 277 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PRINTS E-class P450 group I signature 297 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PRINTS E-class P450 group I signature 345 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PRINTS E-class P450 group I signature 385 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PRINTS E-class P450 group I signature 426 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 PRINTS E-class P450 group I signature 436 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 Coils Coil 241 261 - -
Cca06g01351 500 Gene3D Cytochrome P450 26 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01351 500 Coils Coil 307 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01351 Cca-Chr6 28344601 28349221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01351 27 409 Cytochrome P450 AT3G50660 75.248 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01351 K09587 - gmx:100789515 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01351 06 28344601 28349221 Cca06g01351 06 28344601 28349221 ECH
Cca06g01351 06 28344601 28349221 Cca11g01195 11 30097778 30102971 PCT