Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01339 ATGCATCGGTGCTGCAGTAGTGGCTCCCAGGGGCACGTCATGGGACTGGGACCCTGCACATGTGGGATGTTCCACACCCAAACAAGTTCCTTCTCCATGCTCTTCTCCATGCCCAACCACGAATCCCAAATCTACGACTACTCCTCCTCCCCCTCCGTCGACTGCACCCTCTCCCTCGGAACCCCTTCCACCCGTTTCTCCCAGGACCAAGAAAAACCAACCAAACGCCGCTCCGTCTCCAACTTCTGCTGGGACATACTACAACAATCCAAACACAACAACCCCCAATCCCAAACCAAATCCCCACGTCCCACGAATACCACCGACTCTCTCCTCGCTCGCCGCTGCGCCAATTGCGACACCACTTCCACGCCTCTTTGGAGAAATGGACCCCGAGGCCCCAAGTCGCTGTGCAATGCGTGCGGGATAAGATTCAAGAAGGAGGAGAGAAGAGCGAGCGCGGCGGCGGCATCCGGCGGCGTGATGGAGTCGGCGCAGGCGTACAATAACTCGTGGTACGCGCAGCAGCAGAGTCAGAAGATGCAGTGCTTCTCGCCGGGGATGGGGAGCGAGTTCCGTTTCGTGGAGGACGCCGATCGAGACGCCGAGAACGGCATTCCGTTTCTCTCTTGGAGACTCAACGTGACGGACAGAACCAGCCTCGTTCACGACTTCACCAGATGA 684 0.5833 MHRCCSSGSQGHVMGLGPCTCGMFHTQTSSFSMLFSMPNHESQIYDYSSSPSVDCTLSLGTPSTRFSQDQEKPTKRRSVSNFCWDILQQSKHNNPQSQTKSPRPTNTTDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAASGGVMESAQAYNNSWYAQQQSQKMQCFSPGMGSEFRFVEDADRDAENGIPFLSWRLNVTDRTSLVHDFTR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01339 227 CDD ZnF_GATA 115 147 IPR000679 GO:0006355|GO:0043565
Cca06g01339 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 113 151 - -
Cca06g01339 227 Gene3D - 112 182 IPR013088 GO:0006355|GO:0008270
Cca06g01339 227 ProSiteProfiles GATA-type zinc finger domain profile. 110 146 IPR000679 GO:0006355|GO:0043565
Cca06g01339 227 Pfam GATA zinc finger 116 150 IPR000679 GO:0006355|GO:0043565
Cca06g01339 227 PANTHER GATA TRANSCRIPTION FACTOR 18 1 226 IPR044272 GO:0003700|GO:0009908
Cca06g01339 227 SMART GATA_3 110 162 IPR000679 GO:0006355|GO:0043565
Cca06g01339 227 ProSitePatterns GATA-type zinc finger domain. 116 141 IPR000679 GO:0006355|GO:0043565
Cca06g01339 227 PANTHER GATA TRANSCRIPTION FACTOR 18 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01339 Cca-Chr6 28250994 28252504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01339 20 227 C2C2-Gata Transcription Factor Family AT3G50870 42.456 1.20e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca06g01339 GATA 5.3e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01339 - - ccaj:109801476 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01339 06 28250994 28252504 Cca06g01339 06 28250994 28252504 ECH
Cca06g01339 06 28250994 28252504 Cca11g01188 11 29957559 29959037 PCT