Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01336 ATGGGGAGCCACGTGGTGGATGGTTGTGGAGAGTTCATGGCAAGTGGAGAGGAAGGCACGCCGGAATCACTAAGATGCGCAGCGTGTGAGTGCCACCGCAACTTCCATAGAAAAGAAGTCGAAGGTGAACTATCAcaaccacaaccgcaatcgcaactgcaaccgccgccgcaacctcaacatgttccaaactatcatcacaactactacacgaacaagcacaacGGTCACCTTCACTTCTCTACACCCTCTTCATCTTCCCTCCATCATAGATTGGTTCCCACTTCCTCCACACCAGGTTTGGTTCCTCCAGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCATCAAGTGAAGATCTCAACATGTTTCAGTCCAACACAGGAGCACAGGTGTCAGTGCAGGCACCACTTTCCAAGAAGAGGTTCAGGACCAAATTCTCTCAACAACAGAAAGATAGGATGATGGAGTTTGCAGACAAGATTGGTTGGAAGATCCAGAAACACAATGACCAGGAGGTACAGCAGTTTTGTTCTCAAGTGGGTGTCAAGAGACAGGTTTTCAAGGTTTGGATGCACAACAACAAGCAAACAACTAGTAAGAAGCAGCAAATGTAA 615 0.4098 MGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVEGELSQPQPQSQLQPPPQPQHVPNYHHNYYTNKHNGHLHFSTPSSSSLHHRLVPTSSTPGLVPPVMMAFGGPAESSSEDLNMFQSNTGAQVSVQAPLSKKRFRTKFSQQQKDRMMEFADKIGWKIQKHNDQEVQQFCSQVGVKRQVFKVWMHNNKQTTSKKQQM 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01336 204 Gene3D - 124 201 - -
Cca06g01336 204 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 39 IPR006456 -
Cca06g01336 204 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 1 40 IPR006456 -
Cca06g01336 204 MobiDBLite consensus disorder prediction 40 68 - -
Cca06g01336 204 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 1 201 - -
Cca06g01336 204 Pfam ZF-HD protein dimerisation region 1 40 IPR006456 -
Cca06g01336 204 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 201 - -
Cca06g01336 204 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 139 196 IPR006455 -
Cca06g01336 204 SUPERFAMILY Homeodomain-like 134 200 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01336 Cca-Chr6 28222832 28223446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01336 2 201 ZF-HD Transcription Factor Family AT2G18350 49.029 4.28e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca06g01336 ZF-HD_dimer 5.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01336 - - vra:106776405 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01336 06 28222832 28223446 Cca06g01336 06 28222832 28223446 ECH
Cca06g01336 06 28222832 28223446 Cca11g01183 11 29716208 29721338 PCT