Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01330 ATGAGAACAGATATTGGTGACGGGGACACGTTACAAAATCTCCTCTCCTTCAAGGTGCATAGTAAAATTTGCTTAGAACTGAAGAAATTAGTGGATAGAATCTCAAGAATATTTCCAGACATAGAAGCGGCACGGCCACGATGCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAATGCAATTGCTAAAGCCAAACTACTACTGCAACATTGCTCAGAATGCAGCAAACTCTACCTGGCTGTGACAGGGGATACAATACTCTCAAGATGCCTAAAGGCAACAAGATCATTAGAGAAAAGCTTGATCCAAATTCAGAATATGGTTCCTTTTACGTTGGCTGTAGAGGTTTCTTACATAATTGATGAACTTGAGAGTACAACATTTGTTCTGGACCCTGATGAAGAAGAGGCTGGGAGGGTTGTGAGAGAGTTGCTTACTTTGACCAAAGATTCAATTGATGATTCTGAAGCTAGAGCTCTTCAGTTTGTAGCACCTCGACTGAATATAACATCCCAGAAGGCAATCTTAACAGAGCAAAGATCCATTAAAAATTTACTAGATAAAATTGGACCAACTGACCTCACAAAGAAGAAGATACTCAGATACCTTCTGCATCTACTGAAAAAGCATGGAAAACTCATGGTGGGAGAACGGGTGGAGGTCTATTCTCGTTCTGAAGATCAAGTTACAACAGAAAACTCTAGTCAAGAGTCTCTAAGAAGCCATCTTGTTGAATCAGACCCAACCTTGAACTATGATCAGTATAGAACTCACACAAGTGAGTTGGGTGGAGTTACACTCCCTGAGGAATTTAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGATTCAGGAGTAACATATGAAAGGATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATATGCCCCAAAACCAGAAAGAAACTAGTCCATATGGCCTTGACTCCAAACATGAACATGAAGGGCTTAATATCAAAGTGGTGCATAGATAACGCAGTCTCCGTTCCAGACCCTAGCAGGCTAGCTGAGGATATTCGCTCTTGGGAAGCTTCAAACACTTCCATCAATAGTTTAGGAAGTTATTTCAATGATTTCAACTCGCCAGTGGATCTTACTAACATGTCACTTGGGTCATTGGATACTAGTTTTGGTTCAGATGGCTCACATGGTAAGAGCACTCGTGGCTCAAATTTGATGTCGATCAAGACCAGTGACAATTCTCTCAAACATCGAGCTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAGCTCTGTGATCTTCAGTGGGATTCTCAATGCAAGGTCATTCAAGATCTGAAGGATCATTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCAGAGAATTTCATTGAACCACTTGTCAGATTTTTGAGCAATGCATATGATCTTGGTGACGTTAGGGCGCTGAGAGGTGGAACTCAGCTTCTGTTGGAATTTGTCAACAACTGCAGAAATGGTAAGACTAATTTGAATGAAGATACGTTCATCATGTTGGCAAGATTTCTTGATTCAGAAGTGATAGGAGAAACTCTTGCCATAATGGAAGAACTGTCAGGATATGGTTTTAGTAAAGCTAAAATTGCAGCATCCAGTGCTCTCACTTCTATTTTAAACACACTTAATTCTGATAACAAAGGTTTCCAACAACAAGCTATTAGAATACTGTACAATTTGTCCTTCAGTGGTGAAGTTTGTCTCCGCATGCTATCTCTCGAGTGCATCCCAAAATTGCTGTCATTTTTCAAAGACAGGACCCTTTTGAGATACTCCATATATATATTGAAAAATCTTTGTGATACCGAAGAGGGTAGGAATGCTGTTGCTGATACAAAGGGATGCATATCTTCAGTTGCGGAAATACTTGAAACAGGCAATAATGAGGAACAAGAACATGCACTGGCTGTTCTAGTTTCTTTATGCTCTCAACACGTGGATTATTGTAAGTTGGTAATGGATGGGGATATCAATATCATTACTCTTTGCTACATCTCCCAGAATGGAAATGATAAAGGAAAAGAAAGTGCATCAGAATTGCTCAATCTTTTGGGAGATGTTAAGAATGTTGTTGAGAATGAAGATTGCCCTGAACCAAATATCAACAACACTTCTCGAGATTCCAACAGTCGCACTGAAGAAAATAAACCGTCAAAGAGATCGTTTCTGAAGAAACTACCATTGTTCTCAAAGTCTAGCTCACATGCACCAAAAACCAAAAGATGA 2277 0.3975 MRTDIGDGDTLQNLLSFKVHSKICLELKKLVDRISRIFPDIEAARPRCSSGIESLCLLNNAIAKAKLLLQHCSECSKLYLAVTGDTILSRCLKATRSLEKSLIQIQNMVPFTLAVEVSYIIDELESTTFVLDPDEEEAGRVVRELLTLTKDSIDDSEARALQFVAPRLNITSQKAILTEQRSIKNLLDKIGPTDLTKKKILRYLLHLLKKHGKLMVGERVEVYSRSEDQVTTENSSQESLRSHLVESDPTLNYDQYRTHTSELGGVTLPEEFKCPISSRLMYDPVIIDSGVTYERMWIKKWFDEGNDICPKTRKKLVHMALTPNMNMKGLISKWCIDNAVSVPDPSRLAEDIRSWEASNTSINSLGSYFNDFNSPVDLTNMSLGSLDTSFGSDGSHGKSTRGSNLMSIKTSDNSLKHRAHTEIHDTDLMLLPQLCDLQWDSQCKVIQDLKDHLKSNSQAFVSVSAENFIEPLVRFLSNAYDLGDVRALRGGTQLLLEFVNNCRNGKTNLNEDTFIMLARFLDSEVIGETLAIMEELSGYGFSKAKIAASSALTSILNTLNSDNKGFQQQAIRILYNLSFSGEVCLRMLSLECIPKLLSFFKDRTLLRYSIYILKNLCDTEEGRNAVADTKGCISSVAEILETGNNEEQEHALAVLVSLCSQHVDYCKLVMDGDINIITLCYISQNGNDKGKESASELLNLLGDVKNVVENEDCPEPNINNTSRDSNSRTEENKPSKRSFLKKLPLFSKSSSHAPKTKR 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01330 758 Pfam U-box domain 269 336 IPR003613 GO:0004842|GO:0016567
Cca06g01330 758 PANTHER U BOX DOMAIN-CONTAINING 9 740 - -
Cca06g01330 758 CDD RING-Ubox_PUB 272 314 IPR045210 -
Cca06g01330 758 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Cca06g01330 758 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 740 - -
Cca06g01330 758 MobiDBLite consensus disorder prediction 711 758 - -
Cca06g01330 758 Gene3D - 429 730 IPR011989 -
Cca06g01330 758 SUPERFAMILY ARM repeat 430 701 IPR016024 -
Cca06g01330 758 Pfam Kinesin-associated protein (KAP) 488 658 - -
Cca06g01330 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 342 IPR013083 -
Cca06g01330 758 SUPERFAMILY RING/U-box 261 344 - -
Cca06g01330 758 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01330 Cca-Chr6 28164920 28170576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01330 16 712 U-box Gene Family AT4G36550 39.747 3.38e-150 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01330 - - gmx:100791627 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01330 06 28164920 28170576 Cca06g01330 06 28164920 28170576 ECH
Cca06g01330 06 28164920 28170576 Cca11g01179 11 29587294 29592837 PCT