Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01329 ATGTCGTTCAAAAGCATAGTGAGAGAATTGAAGGAGATGAGGGATGGGATTGGTAGCATTTCGAGGCGAGGTGTGGATAGCAGGCGTTGGAATGGTAGGACAAAGTCACATGTTGCTCCTGATATTACTCTAACTTCGCTTGAGCCTATTGAGCAGGGGAAGTGGGCGAATTTGCCGCCGGAATTGCTTCTCGACATAATTAGTAGGGTGGAAGAGAGTGAGACTACCTGGCCTGCGCGTGCTGTTGTTGTTTACTGCGGTTCGGTTTGTAAATCGTGGAGGGCCGTTACGAAAGAGATTGTAACGACTCCTGAACAATGTGGAAGGCTCACATTTCCAATTTCGTTGAAGCAGCCTGGTCCCCGTGATTCTCCAATACAGTGCTTTATTAGGAGGAACAGAGAAACTTCTACATATATATTGTACATTGGCCTGGTTCCGTCGGAGAATGAGAACGATAAATTGTTATTAGCTGCCAAAAAGATTAGAAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCAAATGATTTTTCTCGGTCCAGCAACACATGTGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAATCAAGCCCCAAACGGAGCTGGAATTCAAACAGATAGTCGGTCTAGTAGGAGATTTCATTCTAAGCAGATATCTTCAAGAGTTCCAGCTTGTAACCATGTTGTTAGCACCATTGCCTATGAGTTGAATGTTCTTCGTGCGAGAGGACCAAGGAGAATGCACTGCACCATGAACTCCATACCCGTCTCAGCTATTCAGGAAGGAGGCAATGCTCCAACTCCAACATCTTTCCCTCAAATCATTGATGAGCCTTTTTCTCCCTCGCCAACACTGAAAGGAAAAAGTCCAATCGGAGATTTAAACATCGCAAGCCTCCCAGAGCTACCAGTACAGAGCCAAGGCTCAGCCGAGCCTCTGGTACTTAAAAACAAGGCTCCTAGATGGCACGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCACAATGTTTCTGCTGCAGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATTTTTACCATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTACCATATGCTTGAGCAGCTTTGATACCAAACCAGCCTGTGAATGA 1245 0.4498 MSFKSIVRELKEMRDGIGSISRRGVDSRRWNGRTKSHVAPDITLTSLEPIEQGKWANLPPELLLDIISRVEESETTWPARAVVVYCGSVCKSWRAVTKEIVTTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYILYIGLVPSENENDKLLLAAKKIRRATGTDFIISLVANDFSRSSNTCVGKLRSNFLGTKFTIYDNQAPNGAGIQTDSRSSRRFHSKQISSRVPACNHVVSTIAYELNVLRARGPRRMHCTMNSIPVSAIQEGGNAPTPTSFPQIIDEPFSPSPTLKGKSPIGDLNIASLPELPVQSQGSAEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFTICLSSFDTKPACE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01329 414 Gene3D - 48 102 - -
Cca06g01329 414 Pfam Tub family 116 409 IPR000007 -
Cca06g01329 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Cca06g01329 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Cca06g01329 414 PANTHER TUBBY-RELATED 1 414 - -
Cca06g01329 414 Pfam F-box domain 55 101 IPR001810 GO:0005515
Cca06g01329 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Cca06g01329 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cca06g01329 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cca06g01329 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cca06g01329 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Cca06g01329 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cca06g01329 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Cca06g01329 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Cca06g01329 414 SUPERFAMILY F-box domain 51 99 IPR036047 GO:0005515
Cca06g01329 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01329 Cca-Chr6 28159760 28161574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01329 1 414 TUB Transcription Factor Family AT2G18280 65.301 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Cca06g01329 Tub 1.4e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01329 K19600 - gmx:100798958 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01329 06 28159760 28161574 Cca06g01329 06 28159760 28161574 ECH
Cca06g01329 06 28159760 28161574 Cca11g01177 11 29573948 29577823 PCT