Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01323 ATGGAAGCCCAACTCAGACTATTCAATTTCAGCCACTCCACTTTGGCTCGCAATCGCAACTTTCTCTGCAAAACAAAACCCATCTCCCACGCGCTCCCTTCCCTGTCCCTCCCACGCGCCGCCTCCAGGGCACCCATCTCCGCCGCCCTCACGCGCCCACCCGTTCCTCCCAACTCCAACCCCAGCACCTTCCCTTTCTCTTCCCAATCTCTCAACTTTTCCAACCCCGTTTCCAACGCCCCCAACCCCTTTCTCTCCCACTCGCTAGGTGGCGCGTTCACATGGAGCCCCGCTTCCGACGCCCCAACCGCCGCGCTTTGCGGAGGCGGGGAGCGTGTCGCCACGGTGGTGCTGCTGGGGTGGCTCGGAGCGAGGACCAAGCACCTCAAGAGGTACGTGGAGTGGTACAACGCGCGTGGCGTTCACGCGGTTACCTTCGTGGTGGACGTGAAAGAGCTTCTTCGCTTTGACCTCGGCCACGTCATCGAGAGCCGAGTCTCTCTCCTCGCCGACCGCCTCGTTTCTTGGGTATCTCGCGACGAGCACGATGGGAGAGAACGGTGTTTGGTTTTTCACACTTTCAGCAACACGGGTTGGTTTGTCTACGGTTACATTCTTGCCCGAATGATGGGTAGCGAGGATCTCATGAAGAAGATTAAGGGATGCGTTGTTGATTCCGGAGGAGGAGAACCTTTCAATCCACAGGTCTGGGCTGCTGGTTTTTCTGCAGCCATATTAAAGAAGCGCAGCTCTTTAGGACCTGTAGTTGAGGTAGAAGGCAAGCTTAAATCAGAGGCTGAAGTTAGCTTGTCAAAGGTTCAACAAAACGAACCTTGCACAATTGAAACTGTGGTCTTGTCACTATTAGAGAAGATTTTCTCGTTTGTTTTGCAGTTGCCAGATGTGAATCAGAGGTTAACAAGGGTTGTAAATGTGCTCATGAAACACCAGCCTTGCCCTCAGCTTTACCTGTATAGTACAGCTGACAAAGTAGTTCCATTTCGATCAATAGAAGCGTTGATTGAGGAGCAGAGGAAGTTGGGGAGGAGGGCCTCAGCGGAGTTGGCGAAGCATCGGATTGTAGTTGGAGTTTGCGACGGACCTATGCTCGCAAAGAAGCAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGAATACATAATGTCAAAACTTTCATAAAGTCTATCAAGCCAGAGTTGGAAGTGCAGGCTGTACCGATCACAGATCCGTTTGGCCCTTCCATTACAGATGAAAAATTGGAGGCTGTGATTGTCAGCAAAGAGACATTACCGGGAGGATTGGCAATAAACAGAAAAAGAGCTGAAAGAGGCCTTTCACTGTTGAAGATAGAAGTTGTAGATTTGCTCTCTGGAGAATCAGGTGAAGTTAAACTGAGTTCATCAATGCTACGGAAGATTGAGGCTGAAAAGGCCAAACAACCAAGCACGATATCGCAGACATCGCAGACGTGGGATTTTGCAAAGATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTGAAGAAACAGGCTCAGAATGACCTTGAAAACGAACTTGATATTGAAGCAGGGAAACTCAACCCCACGGAAGACCGTAACCTCTCTCAGTTCTTCCAAGAAGTTGAATCAATCAAGGTTGAAATGAAAGAGATCACCAATCTCTTATTAGATCTTCAGCAACTGAATGACGAGACAAAGTGCGCTCACAGTGCCAAAGTTCTTCGTGGCCTTAGGGACCGTATGGAGGCTGACATGGTTGCCGTGCTTCGCAAGGCAAGGATTATCAAGGCAATGCTCGAGGTTCTTGATCAATCCAACATAACAAATCGCAGTTTATCAGAATCCTACAAAGAGGGGAGCCCCATTGACAGGACCAGAATGTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGACTTTCAGTCCTTGAGAGACAAGATCCTCTCAGATCACAAGGAAGACTTGAAGAGAAGGTATTACACCGCAACAGGTGAGGTTCCGAGCGAGGAGGACATGGAGAAGATGGTTTCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACAGATGCTGATTTGGGCACTCAGGTTAGGCATGAGGCAGTGATGGATATTCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTATTCTGGTTGAGACGCAAGGAGAGAAAGTGGATAACATTGAGGATAATGTGGCCAGTGCGGGAAACTACATCCATGGTGGGACTAATAGTCTTTACTATGCCAACCAGATGAAGAACAAGAACAGAAAATGGGTGTGTTGGGTTTTTGCAGTGGGACTGATTATACTACTCGTATGCATTGTTGCAATGTTGTCTTCTTGA 2382 0.4845 MEAQLRLFNFSHSTLARNRNFLCKTKPISHALPSLSLPRAASRAPISAALTRPPVPPNSNPSTFPFSSQSLNFSNPVSNAPNPFLSHSLGGAFTWSPASDAPTAALCGGGERVATVVLLGWLGARTKHLKRYVEWYNARGVHAVTFVVDVKELLRFDLGHVIESRVSLLADRLVSWVSRDEHDGRERCLVFHTFSNTGWFVYGYILARMMGSEDLMKKIKGCVVDSGGGEPFNPQVWAAGFSAAILKKRSSLGPVVEVEGKLKSEAEVSLSKVQQNEPCTIETVVLSLLEKIFSFVLQLPDVNQRLTRVVNVLMKHQPCPQLYLYSTADKVVPFRSIEALIEEQRKLGRRASAELAKHRIVVGVCDGPMLAKKQFAELIQPIEERIHNVKTFIKSIKPELEVQAVPITDPFGPSITDEKLEAVIVSKETLPGGLAINRKRAERGLSLLKIEVVDLLSGESGEVKLSSSMLRKIEAEKAKQPSTISQTSQTWDFAKMNDLMTKSFLSYVELKKQAQNDLENELDIEAGKLNPTEDRNLSQFFQEVESIKVEMKEITNLLLDLQQLNDETKCAHSAKVLRGLRDRMEADMVAVLRKARIIKAMLEVLDQSNITNRSLSESYKEGSPIDRTRMSVTNGLRVKLRDMMNDFQSLRDKILSDHKEDLKRRYYTATGEVPSEEDMEKMVSGSLKVEFLAGKTDADLGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKVDNIEDNVASAGNYIHGGTNSLYYANQMKNKNRKWVCWVFAVGLIILLVCIVAMLSS 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01323 793 Pfam Syntaxin 539 734 IPR006011 GO:0016020
Cca06g01323 793 SMART tSNARE_6 694 761 IPR000727 -
Cca06g01323 793 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 699 761 IPR000727 -
Cca06g01323 793 PANTHER SYNTAXIN 499 789 IPR045242 -
Cca06g01323 793 SUPERFAMILY Nucleotidylyl transferase 351 476 - -
Cca06g01323 793 Pfam Eukaryotic protein of unknown function (DUF829) 115 354 IPR008547 -
Cca06g01323 793 Gene3D HUPs 349 480 IPR014729 -
Cca06g01323 793 Pfam SNARE domain 735 785 IPR000727 -
Cca06g01323 793 Gene3D - 696 792 - -
Cca06g01323 793 SMART SynN_4 532 659 IPR006011 GO:0016020
Cca06g01323 793 Gene3D - 532 663 - -
Cca06g01323 793 CDD SNARE_syntaxin1-like 703 758 - -
Cca06g01323 793 CDD SynN 537 687 IPR006011 GO:0016020
Cca06g01323 793 Coils Coil 544 567 - -
Cca06g01323 793 PANTHER SYNTAXIN-112 499 789 - -
Cca06g01323 793 SUPERFAMILY t-snare proteins 535 754 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01323 Cca-Chr6 28105831 28131453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01323 496 793 SNARE and Associated Proteins AT2G18260 59.283 5.79e-128 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01323 K08486 - cit:102608467 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01323 06 28105831 28131453 Cca06g01323 06 28105831 28131453 ECH