Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01318 ATGGATCATTCACCACTTTATAGTAACCGATTCCCTCAGACCTCAAACTCAACCAAGAAGGGACGTAGTGGTTATGAGCCATCAGACACGGAAACAGAATGGCAAGAGATTCCACGGCACGAACGAGAAAGAAGGAACTTCACTTTAGGACTAGAAGAAACAAAAGCACTGAAAAGTCCCATGGCATTACACAGGAGGCATCCTTCAAGGTTTGAACACGAAGTTTCATCAGCTTCAACAGCTTCAGTACCACGAAGAAGACATCACAGCAAATCACCCTATAAGCTGCGCATACCAGGAGATGATGCTGCTGCTGCTTCATCATCATCAACAGGTTTGAACACACGCAGAAGCATTAGTCCCTTGCCGAGACCTGACCTTGGAAGAACCGTGTCTCCCTTCAGCAGAATTCAGGAGCAAAGAACTGAGAAGCCACTTTACAAGAGATCAGTGACTGCTCCGAGGTTGAGGGTGCAAGAGAATAACCTCGGAGGGAGAAACAAAGACATGGTCATGAGACAAAGGGAAGCTTCTATTTTCAAAGCGCCTTCGGTTGGAGAAATCAACGAAAGGATAGCAGAGGTGAAGCTGGCTAAAGATCCCACTAGTGATTATTCATCGGTGCTTGAGAGCACTGATTCCATTAACCCGGGTGACCTTTTCTTTTCTCATGAATGCAATGCCTTCCATGGGAAGAATTCTTCGCTGCCAAAACTCATCCAACAAAATGAGTATTTCAGTCCAAGGCCAACGGTTAACACTGTGAGAACTCCATCTGAAAGCAAAGGAAATGGTAACCTTAAGCTTAATATGAATATGAATGTCTTGTCTCGACCAACCACAGGTTTAAGTTCTGCTGTTACGAACAGAAAGGGCAGTGACACTGGGAAGCCAAGTAGTGTGACAAGCGAAGGTAGTGGGAAGACAACTGCAAGCATGAGGAAGTTCATATCCAACAGAAAAAATAACCAGAAAGATACGTGGTTTGCTTGTATGAGAACAGGTAACTGTAGAACCACGAGAAAATCTCCTAAACGTAGACCGATTGATGAATCTTCTTTCATTGAGAGGGCAGTGGTAGTGCAAAAACTCCCACAATTTTGGGCAGATAAACACCAACCGGCGTCACTTGATGGCTTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAATTGGTGTCTCACGGTCCTTGTCCTCATATTTTGCTCAAAGGACCCTCTGGTTCCGGGAAAAGAGAACTAGCAATGGCTCTTCTTCGTGAAATATATGGTGATGCAATTTGTAATCTGTCTCATGATTTAAGACATTTCCCTATTCAGGACCAAAGGCTTAAGAAAGTATCTTTTCCAATAACATCGAGTTCTCATCACATGGAGCTCAATGTAAATTCAGAACCAAATGCTAAATATGCTTTAATGGGATTAATCAAAGAAATTAACAATATATATGCGATTGCCCCTGAAGTCAGCAACATTAATTTCAAGTTAGATTATAAAGTAATAGTTCTTTATGACGTCCACAAAGCAGTAGATAACATCCTGCACATTATCAAATGGATCATAGACCGCTATTCTGATATATGCAAACTTGTACTCTGCTGTGAAGATGATGCAAGCATTATTGAACCAGTGAAAAACCGGTTCAAAGTCATTCAAGTTGATGCTCCTCAAACTCACGAAATTATTGAGGTTCTTATTCAGGTAGCAAAGAATGAGGAAATTGATCTATCCATGAATTTTGCTGTAAAAATTGCTGCAAAATCTAAGCAGAACCTCAGAAAAGCAATCATGGCTCTTGAAGCATGCAAAGCACACAACTATCCATTTTCAGAAGAACAACCAATTCCGGTTGGATGGGAGGAGACTGTAATAGAAGTTGCCGCAGAGATCCTAGCAGATCCATCGTTTTCACGCTTACTCTCAATACGAGGGAAATTTCAAATACTTCTCTTGGATTTTGTCCACCCGAAATTGATTCTCCAGAAACTGGTGGAACAGCTCCTAAAGAGAATTGAGTCCAGCTTAAAAAGGGAGCTTTACTACTGGCATGCTTATTATGATAGAAGACTCCCACCAGGAATAACAGCTCTACTAAAGCTAGAAGAATTTGTGGCCAAGTTCATGAGCATGTGCAGAAAAAGCTCTGGCAGTCGGCAATATGTGTAG 2169 0.4191 MDHSPLYSNRFPQTSNSTKKGRSGYEPSDTETEWQEIPRHERERRNFTLGLEETKALKSPMALHRRHPSRFEHEVSSASTASVPRRRHHSKSPYKLRIPGDDAAAASSSSTGLNTRRSISPLPRPDLGRTVSPFSRIQEQRTEKPLYKRSVTAPRLRVQENNLGGRNKDMVMRQREASIFKAPSVGEINERIAEVKLAKDPTSDYSSVLESTDSINPGDLFFSHECNAFHGKNSSLPKLIQQNEYFSPRPTVNTVRTPSESKGNGNLKLNMNMNVLSRPTTGLSSAVTNRKGSDTGKPSSVTSEGSGKTTASMRKFISNRKNNQKDTWFACMRTGNCRTTRKSPKRRPIDESSFIERAVVVQKLPQFWADKHQPASLDGFICNKQEAQLLKELVSHGPCPHILLKGPSGSGKRELAMALLREIYGDAICNLSHDLRHFPIQDQRLKKVSFPITSSSHHMELNVNSEPNAKYALMGLIKEINNIYAIAPEVSNINFKLDYKVIVLYDVHKAVDNILHIIKWIIDRYSDICKLVLCCEDDASIIEPVKNRFKVIQVDAPQTHEIIEVLIQVAKNEEIDLSMNFAVKIAAKSKQNLRKAIMALEACKAHNYPFSEEQPIPVGWEETVIEVAAEILADPSFSRLLSIRGKFQILLLDFVHPKLILQKLVEQLLKRIESSLKRELYYWHAYYDRRLPPGITALLKLEEFVAKFMSMCRKSSGSRQYV 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01318 722 CDD AAA 383 423 - -
Cca06g01318 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 610 IPR027417 -
Cca06g01318 722 MobiDBLite consensus disorder prediction 279 311 - -
Cca06g01318 722 MobiDBLite consensus disorder prediction 104 118 - -
Cca06g01318 722 Gene3D - 366 557 IPR027417 -
Cca06g01318 722 MobiDBLite consensus disorder prediction 7 23 - -
Cca06g01318 722 Gene3D - 559 616 - -
Cca06g01318 722 PANTHER OS02G0704966 PROTEIN 175 721 - -
Cca06g01318 722 SUPERFAMILY post-AAA+ oligomerization domain-like 619 711 IPR008921 GO:0003677|GO:0006260
Cca06g01318 722 MobiDBLite consensus disorder prediction 24 51 - -
Cca06g01318 722 Gene3D - 619 712 - -
Cca06g01318 722 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 175 721 - -
Cca06g01318 722 MobiDBLite consensus disorder prediction 1 145 - -
Cca06g01318 722 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01318 Cca-Chr6 28015315 28019751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01318 367 711 Core DNA Replication Machinery Family AT5G27740 38.968 1.34e-76 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01318 K10756 - gmx:100795321 1206.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01318 06 28015315 28019751 Cca06g01318 06 28015315 28019751 ECH