Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01313 ATGATGGAGTCGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCTGCGGAAGAAAGTTGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGATAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGGACTAATAGAGCCACCATGGCTGGGTTTTGGAAGGCCACAGGAAGAGACAAAGCAGTGTATGACAAGACAAAACTAATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCATGAGTATAGGCTTGAATCCGATGAGAATGGACCTCCACAGGAGGAAGGATGGGTTGTGTGCAGAGCCTTCAAGAAAAAAACCACTGGGCAAACGAAGACTATGGAAGGATGGGACTCAAGCTACTTCTACGAAGAAGCAAGTGGAGTAAGCACCATGGTCGATCCAATTGATCTCATTTCAAGGCAGTCTCAGAGCTTTTTAGCACAAAATTTCATGTGTAAGCAAGAGATAGAAGCAGATAACTTGGCAAGCATGCTTCAAGATCCATTTGTTCAACTTCCTCAGCTAGAAAACCCGTCTTTGCCGCTAATAAAGAGGCCAAGCACAGTGTCACTAGTATCAGACAATAACGAAGATGAAGACATTCAAAACAGGTTATACAACAACACCACAAAGAAAGTCACTGATTGGAGAGCTCTTGACAAGTTTGTAGCCTCTCAACTGAGTCAAGAAGACATGCATGAAACTAATGGACTCTCGAGCTTTGAACCCCATAATAATTCGGACTTGGCATTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAGGTTAAGCCCCTTTTTAAATACAGGCTCAGACTGTGATATTGGGATATGCGTATTTGATAAATGA 1014 0.432 MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTMEGWDSSYFYEEASGVSTMVDPIDLISRQSQSFLAQNFMCKQEIEADNLASMLQDPFVQLPQLENPSLPLIKRPSTVSLVSDNNEDEDIQNRLYNNTTKKVTDWRALDKFVASQLSQEDMHETNGLSSFEPHNNSDLALLLLQSSRDEGNRLSPFLNTGSDCDIGICVFDK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01313 337 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Cca06g01313 337 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Cca06g01313 337 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 5 316 - -
Cca06g01313 337 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Cca06g01313 337 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 316 - -
Cca06g01313 337 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01313 Cca-Chr6 27942973 27945628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01313 2 336 NAC Transcription Factor Family AT2G18060 66.033 3.93e-167 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca06g01313 NAM 4.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01313 - - pvu:PHAVU_002G110900g 660.603