Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01312 ATGTTTTCCCCACGAGACATGCCTTCCCCGTCCTCAATCTTCTCGGCCTACGCCTCGATGACGGCGTCCATCATGCTCCTCCGTTCCATGGCGAACGAGCTGATCCCGCAGCCCCTCCGCGGCTACCTCTTGAACGCCATCCAGTACCTGATAAAGCCCCGCTCCTCCACGCTGACCCTGGTCATCGAGGAGTCGACGGGCATCAGCCGCAACCAGGTGTACGACGCCGCCGAGGCCTACCTCTCCACCCGCGTCAGCCCCGACAACAACCGCCTCAAGATCACCAAGACCCCCAAGGAGAAGAAGCTCACCCTCCGCCTGGAGAAGGGCGAGAAGGTCCTGGACATGTTCAACGGCGTCCCCTTCAAGTGGCGCTTCATCTGCGCGGAGTCCGACAAAAGCGCCAGCAACAGCCCTAACGAGCACAACAGCATCTCCGTGAGGTCTGAAAAACGGTCCTTCGAGCTGCGGTTCCCGAAGAAGCACAAGGAGATGGCGCTCCAGGTCTACCTCCCCTTCATCCTGGACAGGGCCAAGGAGATGAAGGACGATGAGCGCCTCCTCAAGATGCACACGCTCAACACCTCCTATTGCTACAGCGGGGTCAAGTGGGACTCCATAAACTTGGAGCATCCCTCCACTTTTGAGACCCTGGCCATGGAGCCTCAGCTGAAGGATGCGGTCATGCAGGACCTTGATAGGTTCGTGAAGCGGAGGGAGTTTTACAAGAGGGTTGGCAGGGCCTGGAAGCGTGGATACTTGCTTTATGGCCCTCCCGGCACTGGCAAGTCTAGCTTGATCGCTGCCATGGCTAATTACTTGAAGTTTGACATCTTTGACCTCCAGCTTGCCAACATAGTCAGGGACTCTGACCTCAGGAAACTGCTTCTCGCCACTGCCAATAGGTCCATTTTGGTCATTGAAGACATTGATTGCACTGTCGATCTGCCAGACCGTCACCATGCTGAGGGACGTAAACCAACTGACGTCCAGGTTAAGACAGGCAGGTTTACTCTGTCGGGTCTGCTTAACTACATGGATGGGTTGTGGTCAAGTGGTGGAGAGGAGCGAATTATAATCTTCACTACTAACCACAGAGAAAGAATTGATCCTGCGTTGCTGCGCCCTGGTCGTATGGACATGCATATTCACTTGTCCTTCCTCGGAGGCAAGGCATTTCGAATCCTAGCTTCCACTTATTTAGGCATTGAAGGACATCATCCACTGTTTGAACAAATCGATGGTCTATTGGACAAATTACAAGTGACTCCTGCAGTAGTAGCAGAGCAGTTAATGAGAAATGAGGATCCCCAAGTTGCTTTGGAAGAACTTGTTAAATTTCTCAAACAAATGGACAAGGAAAGCCTACTTTAG 1374 0.5349 MFSPRDMPSPSSIFSAYASMTASIMLLRSMANELIPQPLRGYLLNAIQYLIKPRSSTLTLVIEESTGISRNQVYDAAEAYLSTRVSPDNNRLKITKTPKEKKLTLRLEKGEKVLDMFNGVPFKWRFICAESDKSASNSPNEHNSISVRSEKRSFELRFPKKHKEMALQVYLPFILDRAKEMKDDERLLKMHTLNTSYCYSGVKWDSINLEHPSTFETLAMEPQLKDAVMQDLDRFVKRREFYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLANIVRDSDLRKLLLATANRSILVIEDIDCTVDLPDRHHAEGRKPTDVQVKTGRFTLSGLLNYMDGLWSSGGEERIIIFTTNHRERIDPALLRPGRMDMHIHLSFLGGKAFRILASTYLGIEGHHPLFEQIDGLLDKLQVTPAVVAEQLMRNEDPQVALEELVKFLKQMDKESLL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01312 457 Pfam Domain associated at C-terminal with AAA 35 127 IPR025753 -
Cca06g01312 457 SMART AAA_5 249 389 IPR003593 -
Cca06g01312 457 Gene3D - 384 453 - -
Cca06g01312 457 PANTHER BNAA10G17020D PROTEIN 6 452 - -
Cca06g01312 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 436 IPR027417 -
Cca06g01312 457 Gene3D - 202 383 IPR027417 -
Cca06g01312 457 ProSitePatterns AAA-protein family signature. 357 375 IPR003960 GO:0005524|GO:0016887
Cca06g01312 457 CDD AAA 238 386 - -
Cca06g01312 457 PANTHER BCS1 AAA-TYPE ATPASE 6 452 - -
Cca06g01312 457 Pfam ATPase family associated with various cellular activities (AAA) 254 385 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01312 Cca-Chr6 27910131 27934227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01312 227 385 Calmodulin-binding Proteins AT3G56690 28.144 2.03e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01312 - - gmx:100789621 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01312 06 27910131 27934227 Cca06g01312 06 27910131 27934227 ECH