Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01309 ATGGTCAATTCTATAAGCTTCCTCCTACTTTTGTCTCTACTAGCCTTTGCTCCCTTCTGTCACTGTAATAAGAAAATAGCAGGTTACCTTTACCCTCAATTTTACGATGGTTCATGCCCAAGAGCTCAAGAGATTGTTAAATCCATCGTTTCCAAGGCTGTGGCAAAAGAACCCCGCATGGCTGCTTCATTGTTGAGACTACATTTCCATGATTGTTTTGTCAAGGGCTGTGATGCATCGTTGTTGCTAGATAGCAGTGGAACTATTATCAGTGAGAAGAGGTCAAATCCCAACCCTGTAGCTGCTAGAGATTCAACTGTTCTTACTGGTGGACCTAGCTGGGATACCATTTTAACAAAGTTCAAGCTTAAGGGGCTTGATATTGTTGATCTAGTTGCTCTATCTGGGAGCCACACTATAGGAGATTCTCGATGCACGAGCTTCAGGCAGAGACTGTACAACCAAACAGGCAATGGAAAATCAGACTTCACTCTAGATCAAAAGTATGCTGCTCAATTGCGAACTCGTTGTCCAAGATCTGGTGGAGACCAGAATCTGTTTGTCCTAGACTTTGTCACCCCAATTAAATTTGACAACTTCTACTACAAGAACTTGTTGGCTAACAAGGGTCTGTTAAACTCTGACGAAGTTCTTTTGACAAAGAATCAAATATCTGCAGATTTAGTGAAGAAGTATGCAGAGAGAAACGATCTTTTCTTTGAACAATTTGCCAAGTCCATGGTTAAGATGGGAAACATTACTCCTTTAACTGGATCAAGGGGAGAGATCAGAAAGAACTGCAGAAAAATTAACTCCTGA 819 0.4127 MVNSISFLLLLSLLAFAPFCHCNKKIAGYLYPQFYDGSCPRAQEIVKSIVSKAVAKEPRMAASLLRLHFHDCFVKGCDASLLLDSSGTIISEKRSNPNPVAARDSTVLTGGPSWDTILTKFKLKGLDIVDLVALSGSHTIGDSRCTSFRQRLYNQTGNGKSDFTLDQKYAAQLRTRCPRSGGDQNLFVLDFVTPIKFDNFYYKNLLANKGLLNSDEVLLTKNQISADLVKKYAERNDLFFEQFAKSMVKMGNITPLTGSRGEIRKNCRKINS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01309 272 SUPERFAMILY Heme-dependent peroxidases 30 271 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 ProSiteProfiles Plant heme peroxidase family profile. 29 271 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 Gene3D - 30 100 - -
Cca06g01309 272 PANTHER PEROXIDASE 72-RELATED 115 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 Pfam Peroxidase 112 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 Pfam Peroxidase 46 99 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 Gene3D Peroxidase, domain 2 115 250 - -
Cca06g01309 272 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Cca06g01309 272 Gene3D - 251 271 - -
Cca06g01309 272 CDD secretory_peroxidase 30 270 IPR033905 GO:0004601|GO:0042744
Cca06g01309 272 PANTHER PEROXIDASE 72-RELATED 5 98 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 PANTHER PEROXIDASE 115 271 - -
Cca06g01309 272 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Cca06g01309 272 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 PRINTS Plant peroxidase signature 124 137 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g01309 272 PANTHER PEROXIDASE 5 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01309 Cca-Chr6 27867398 27869405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01309 1 271 Peroxidase AT5G66390 60.060 3.49e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01309 K00430 - gmx:100788562 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01309 06 27867398 27869405 Cca06g01309 06 27867398 27869405 ECH