Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01304 ATGGCGGGTTTATTCTCACTAGGAGGGAGAGGGAACAACAACAACAACGGTCAAGAGGAAATTCCTCCTCCTCCTGATACCTTATTCTGGTACAATAAGAATGAGGACATTTCCTCTTACAGAGGTGGAGGGAGTGGGTTGGAGCTATGGAACcagcaacagcaacagcaacagcaacagcTTGTGGGCCAACCGCGACCTCTCTTTCACCAAGATCTCTATTCCGCGTTAGGAGTTGGGTCCAGCAGGCCCATCTCCGATGATCAGTCCTCTTCGAGATCCGGCTTCATGGCTAGCGGAGGGATCAGCTGTCAGGACTGCGGGAACCAAGCTAAGAAAGATTGTCCTCACATGCGCTGTAGAACGTGCTGCAAGAGCCGAGGCTTTGATTGCCAAACTCATGTCAAGAGCACTTGGGTTCCCGCTTCCAGACGCCGCGAACGACAACAACAACTCGCCGTTTTGCAACAACAACAACAAACCCTCGAACCTTCTGGAGACCGCCACAGAGAGAGGGATCATAATTCTTCGCCTCTCGCCTGCACTCGCCTTCCTTCAAACCCTTCCCCCTCAGGGTTAGAGGAGATGAATTTCCCTGCAGTGGTGAGGTCTTCGGCGGACTTTAGGTGCGTACGTGTGAGCTCCGTGGACGATGCGGAGGAGGAGTACGCTTACTCAACCGCCGTCAACATTGGAGGTCACGTGTTCAGAGGAATTTTATACGACTATGGTCCAGAAAGTAACACTAATTACATGGGTGGTGGGGAGAGCTCCTCCGCTGGTGTTGGAGGGTTAAACCTCACTTCCGGGACCGTTGTGTCTGGGGCACTTGTTGATCCTTCCTCTTCCATGTATTCCGCTCCTCTTAACACCTTCATGCCTGGTAGCAGCGAATAA 897 0.5072 MAGLFSLGGRGNNNNNGQEEIPPPPDTLFWYNKNEDISSYRGGGSGLELWNQQQQQQQQQLVGQPRPLFHQDLYSALGVGSSRPISDDQSSSRSGFMASGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLAVLQQQQQTLEPSGDRHRERDHNSSPLACTRLPSNPSPSGLEEMNFPAVVRSSADFRCVRVSSVDDAEEEYAYSTAVNIGGHVFRGILYDYGPESNTNYMGGGESSSAGVGGLNLTSGTVVSGALVDPSSSMYSAPLNTFMPGSSE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01304 298 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 296 IPR007818 GO:0003700|GO:0006355
Cca06g01304 298 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 198 245 IPR006511 -
Cca06g01304 298 MobiDBLite consensus disorder prediction 1 30 - -
Cca06g01304 298 MobiDBLite consensus disorder prediction 149 163 - -
Cca06g01304 298 Pfam Domain of unknown function (DUF702) 101 246 - -
Cca06g01304 298 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 296 - -
Cca06g01304 298 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 103 145 IPR006510 -
Cca06g01304 298 MobiDBLite consensus disorder prediction 142 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01304 Cca-Chr6 27806708 27812749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01304 1 295 C2H2 Transcription Factor Family AT5G66350 46.847 1.45e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Cca06g01304 DUF702 9.3e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01304 - - gmx:100797973 405.986